drawingKaryo: Draw the karyogram plot.

In bioinfo16/RIPAT: Retroviral Integration Pattern Analysis Tool (RIPAT)

Description

Draw a karyogram plot and show integration site.

Usage

drawingKaryo(hits, feature,
             organism = 'GRCh37',
             outPath = getwd(), 
             outFileName = paste0('RIPAT', round(unclass(Sys.time()))))

Arguments

hits	a GR object. This object made from makeExpSet function.
feature	a GR object. This object made from annotation function.
organism	a character vector. This function serves 2 versions of organisms such as GRCh37, GRCh38. Default is 'GRCh37'.
outPath	a string vector. Type path to save a plot.
outFileName	a character vector. This value used when saving the idegoram image file.

Value

Return the ideogram plot and object.

Examples

data(blast_obj); data(blast_gene)
drawingKaryo(hits = blast_obj, feature = blast_gene$Gene_data, outFileName = 'blast_res')

bioinfo16/RIPAT documentation built on Oct. 16, 2020, 1:39 p.m.