get_geneExprValues: Gene Expression Function

In biomedbigdata/SPONGE-web-R: User Friendly Application Of The SPONGE API

Gene Expression Function

Description

Get all expression values for gene(s) of interest.

Usage

get_geneExprValues(disease_name, ensg_number = NULL, gene_symbol = NULL)

Arguments

disease_name	The name of the dataset of interest as string. If default is set, all available datasets with corresponding informations are shown. Fuzzy search is available (e.g. "kidney clear cell carcinoma" or just "kidney").
ensg_number	A vector of ensg number(s). If ensg_number is set, gene_symbol must be NULL.
gene_symbol	A vector of gene symbol(s). If gene_symbol is set, ensg_number must be NULL.

Value

A data_frame with gene expression values.

Examples

# Retrieve gene expression values for specif genes by ensg_numbers
get_geneExprValues(disease_name = "kidney clear cell carcinoma",
                   ensg_number = c("ENSG00000259090","ENSG00000217289"))

# Retrieve gene expression values for specif genes by gene_symbols
get_geneExprValues(disease_name = "kidney clear cell carcinoma",
                   gene_symbol = c("SEPT7P1","TIGAR"))

 ## Not run: 
# Ensg_numbers and gene_symbols together.
get_geneExprValues(disease_name = "kidney clear cell carcinoma",
                   ensg_number = c("ENSG00000259090","ENSG00000217289"),
                   gene_symbol = c("SEPT7P1","TIGAR"))

## End(Not run)

biomedbigdata/SPONGE-web-R documentation built on Sept. 18, 2022, 8:58 p.m.