get_sponged_miRNA: Find Sponged miRNAs

In biomedbigdata/SPONGE-web-R: User Friendly Application Of The SPONGE API

Find Sponged miRNAs

Description

Get all miRNAs that contribute to all interactions between the given identifiers (ensg_number or gene_symbol).

Usage

get_sponged_miRNA(
  disease_name,
  ensg_number = NULL,
  gene_symbol = NULL,
  between = FALSE
)

Arguments

disease_name	Name of the specific cancer type/dataset. If default is set, all available datasets with corresponding informations are shown. Fuzzy search available.
ensg_number	A vector of ensg number(s). If ensg number is set, gene symbol and gene type must be NULL. One of the three identifiers must be provided.
gene_symbol	A vector of gene symbol(s). If gene symbol is set, ensg number and gene type must be NULL. One of the three identifiers must be provided.
between	If false (default), all interactions where one of the interaction partners fits the given genes of interest will be considered. If true, just interactions between the genes of interest will be considered.

Value

A data_frame containing all found miRNAs.

Examples

get_sponged_miRNA(disease_name="kidney", gene_symbol = c("TCF7L1", "SEMA4B"), between=TRUE)

biomedbigdata/SPONGE-web-R documentation built on Sept. 18, 2022, 8:58 p.m.