get_mirnaExprValues: miRNA Expression Function

In biomedbigdata/SPONGE-web-R: User Friendly Application Of The SPONGE API

miRNA Expression Function

Description

Get all expression values for miRNA(s) of interest.

Usage

get_mirnaExprValues(disease_name, mimat_number = NULL, hs_number = NULL)

Arguments

disease_name	The name of the dataset of interest as string. If default is set, all available datasets with corresponding informations are shown. Fuzzy search is available (e.g. "kidney clear cell carcinoma" or just "kidney").
mimat_number	A vector of mimat_number(s). If mimat_number is set, hs_number must be NULL.
hs_number	A vector of hs_number(s). If hs_number is set, mimat_number must be NULL.

Value

A data_frame with mirna expression values.

Examples

# Retrieve gene expression values for specif miRNAs by mimat_numbers
get_mirnaExprValues(disease_name = "kidney clear cell carcinoma",
                    mimat_number = c("MIMAT0000076", "MIMAT0000261"))

# Retrieve gene expression values for specif miRNAs by hs_numbers
get_mirnaExprValues(disease_name = "kidney clear cell carcinoma",
                    hs_number = c("hsa-miR-21-5p", "hsa-miR-183-5p"))

 ## Not run: 
# Mimat_numbers and hs_numbers together.
get_mirnaExprValues(disease_name = "kidney clear cell carcinoma",
                    mimat_number = c("MIMAT0000076", "MIMAT0000261"),
                    hs_number = c("hsa-miR-21-5p", "hsa-miR-183-5p"))

## End(Not run)

biomedbigdata/SPONGE-web-R documentation built on Sept. 18, 2022, 8:58 p.m.