View source: R/utils_plotting.R
plot_dimred | R Documentation |
Dimensionality reduction plot
plot_dimred(
df,
name,
type = "umap",
plot = "batch",
markers = NULL,
seed = 473,
return_coord = FALSE
)
df |
tibble of data to plot |
name |
Name of the output plot |
type |
Type of dimensionality reduction ("umap" or "pca") |
plot |
The column to use for coloring |
markers |
Markers to include in dimensionality reduction |
seed |
For reproducibility |
return_coord |
Return coordinates and not just the plot |
Other plot:
plot_density()
,
plot_dimred_full()
,
plot_save_four()
,
plot_save_two()
,
plot_umap_labels()
## Not run:
uncor_umap <- plot_dimred(uncorrected, "Uncorrected", markers = markers)
## End(Not run)
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