View source: R/utils_plotting.R
plot_dimred_full | R Documentation |
Dimensionality reduction plots - colored with labels, batches and marker expression
plot_dimred_full(
df,
name,
type = "umap",
markers = NULL,
seed = 473,
out_dir = NULL
)
df |
tibble of data to plot |
name |
Name of the output plot |
type |
Type of dimensionality reduction ("umap" or "pca") |
markers |
Markers to include in dimensionality reduction |
seed |
For reproducibility |
out_dir |
Directory to put output figures |
Other plot:
plot_density()
,
plot_dimred()
,
plot_save_four()
,
plot_save_two()
,
plot_umap_labels()
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