plot_dimred_full: Dimensionality reduction plots - colored with labels, batches...

View source: R/utils_plotting.R

plot_dimred_fullR Documentation

Dimensionality reduction plots - colored with labels, batches and marker expression

Description

Dimensionality reduction plots - colored with labels, batches and marker expression

Usage

plot_dimred_full(
  df,
  name,
  type = "umap",
  markers = NULL,
  seed = 473,
  out_dir = NULL
)

Arguments

df

tibble of data to plot

name

Name of the output plot

type

Type of dimensionality reduction ("umap" or "pca")

markers

Markers to include in dimensionality reduction

seed

For reproducibility

out_dir

Directory to put output figures

See Also

Other plot: plot_density(), plot_dimred(), plot_save_four(), plot_save_two(), plot_umap_labels()


biosurf/cyCombine documentation built on May 23, 2024, 4:07 a.m.