Man pages for bletcher/linkedModels
Link movement, growth, and survival models
| addNPasses | Get pass data from raw data table |
| addSurvivals | Add survival estimates from detection model by section,... |
| cleanData | Clean data from the PIT tag database |
| crossValidate | Turn observedLength values to NA for a percentage of the... |
| getCoreData | Extract data from the PIT tag database |
| getDensities | Get (estimate) densities by section, river, year based on num... |
| getPrediction | Generate predictions from a set of iterations of a jags model... |
| getPredictionSigma | Generate predictions of sigma the sd in growth from a set of... |
| getPropSampled | Get propoortion of sections sampled by river,sample |
| getRMSE | Plot observed/predicted and return RMSE |
| getSites | Get data from sites table |
| getYOYCutoffs | Get cutoFFYoy data |
| hello | Hello, World! |
| mergeSites | Merge sites table |
| minimalData | Show minimal data |
| plotPred | Plot predictions from a set of iterations of a jags model run |
| runDetectionModel | Run the detection model |
| runGrowthModel | Run the growth model using jags |
