Files in bmcnellis/SDEF.analysis
Data Analysis for 2016 San Dimas Experimental Forest Project

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/CalculateBioDensity.R R/CalculateCarbonContent.R R/ConvertFrameDepth.R R/data.R
SDEF.analysis.Rproj
data/Adenostoma_2016_mphillips_preprocessed.rda
data/Adenostoma_2016_mphillips_processed_noavg.rda
data/Adenostoma_2016_mphillips_processed_withavg.rda
data/Alldates_depthbin_rootbiomass.Rdata
data/RootBiomass_totals.Rdata
data/SDEF_root_ash_weights.rda
data/SDEF_root_data_raw.rda
data/SDEF_roots_post_aggregation_by_date.rda
data/SDEF_roots_post_aggregation_by_month.rda
data/SDEF_roots_post_aggregation_by_season_v1.rda
data/SDEF_roots_post_aggregation_by_season_v2.rda
data/SDEF_roots_post_aggregation_by_season_v3.rda
data/SDEF_roots_pre_aggregation.rda
data/SDEF_roots_pre_process.rda
data/Sapflow_normalizedtomax_14dayavg.Rdata
data/max_daily_adenostoma_unaggregated.Rdata
exec/2019_04_25_Reorganize_sapflowdata_forFigure.R exec/Figure2_AbovegroundPheno.R exec/Figure2_AbovegroundPheno_revamp.R exec/Figure3_Root_by_depth.R exec/Figure3_Root_by_depth_wholeprofile_revision.R exec/Figure_RootBiomass_wholeprofile.R exec/Isotpe_Figures.R exec/LMER_VWC_modelstuff.R exec/RepeatedMeasuresAnova_forRoots.R exec/RootBiomass_wholeprofile_org.R exec/SurfaceArea_roots.R exec/VWC_Diurnal_forEach_Rep.R exec/VWC_Runningavg_ploting_wPrecip.R
inst/MS_Drafts/Figures_V5.docx
inst/MS_Drafts/Figures_V5_EA.docx
inst/MS_Drafts/Phillips_Chapter_1_V6.docx
inst/MS_Drafts/Phillips_Chapter_1_V7.docx
inst/MS_Drafts/Phillips_Chapter_1_V8.docx
inst/MS_Drafts/Phillips_Chapter_1_V8_EA.docx
inst/MS_Drafts/Phillips_Chapter_1_V9.docx
inst/MS_Drafts/Phillips_Chapter_1_V9_BEM.docx
inst/MS_Drafts/Phillips_SDEF_MS_abstract.docx
inst/MS_Drafts/Supplemental_Material.docx
inst/extdata/2017_21_07_Grass_and_Adenostoma_root.csv
inst/extdata/22May2016_Adenostema_FLUX.dat
inst/extdata/8May2016_probe_metadata.csv
inst/extdata/CR1000_FLUX_06_29_16.dat
inst/extdata/CR1000_FLUX_1_11_16.csv
inst/extdata/CR1000_FLUX_1_21_16.csv
inst/extdata/CR1000_FLUX_1_25_16.csv
inst/extdata/CR1000_FLUX_1_29_16.csv
inst/extdata/CR1000_FLUX_2_05_16.csv
inst/extdata/CR1000_FLUX_2_12_16.csv
inst/extdata/CR1000_FLUX_2_25_16.csv
inst/extdata/CR1000_FLUX_3_16_16.csv
inst/extdata/CR1000_FLUX_3_4_16.csv
inst/extdata/CR1000_FLUX_4_12_16.dat
inst/extdata/SDEF_2016_RootAshWeights.txt
inst/extdata/SDEF_NDVI.csv
inst/extdata/SDEF_NDVI_03_2019.csv
inst/extdata/SDEF_NDVI_50perccloud.csv
inst/extdata/SDEF_rain_events.csv
inst/old_files/2017_28_06_RootBiomass_SDEF.Rmd
inst/old_files/2017_28_06_RootBiomass_SDEF.nb.html
inst/old_files/2018_01_09_RootBiomass_SDEF.R inst/old_files/FindBioDensityOutliers.R
inst/old_files/RAW_2017_21_07_Grass_and_Adenostoma_root.csv
inst/old_files/RAW_Adenostoma_Rootlengths.csv
inst/old_files/RAW_Grass_RootLengths.csv
inst/old_files/Root_Biomass_Analysis.Rmd inst/old_files/SDEF_2016_RootAshWeights.R
inst/old_files/SDEF_2016_RootAshWeights.txt
inst/old_files/SDEF_2016_RootLengths.R
inst/old_files/SDEF_2016_RootLengths.txt
inst/old_files/SDEF_2017_RootLengths.txt
inst/old_files/SDEF_Biomass_Analysis_22July2017.R inst/old_files/SDEF_root_analysis_May2018 (2).Rmd inst/old_files/SDEF_root_analysis_May2018.Rmd
inst/outputs/2018_17_05_Rootbiomass_bymonth_bydepth.png
inst/outputs/2018_17_05_Rootbiomass_bymonth_bydepth_bestone!.png
inst/outputs/2018_17_05_Rootbiomass_byseasonV1_bydepth.png
inst/outputs/2018_17_05_Rootbiomass_byseasonV2_bydepth.png
inst/outputs/2018_17_05_Rootbiomass_byseasonV3_bydepth.png
inst/outputs/2018_18_05_18Ofig_boxplot.png
inst/outputs/2018_18_05_Figure2_abovegroundpheon_not_smoothed.png
inst/outputs/2018_18_05_Figure2_abovegroundpheon_smoothed_no_se.png
inst/outputs/2018_18_05_Figure2_abovegroundpheon_smoothed_se.png
inst/outputs/2018_21_05_12Ofig_boxplot.png
inst/outputs/Adenostoma_2016_mphillips_max_2wk_running.png
inst/outputs/Adenostoma_2016_mphillips_max_daily_flux.png
inst/outputs/Adenostoma_2016_mphillips_relative_sapflux.png
inst/outputs/Adenostoma_2016_mphillips_sapflux.png
inst/outputs/Figure3_bydepth_bymonth/2018_16_05_Rootbiomass_bymonth_bydepth.tiff
inst/outputs/Figure3_bydepth_bymonth/2018_17_05_Rootbiomass_bymonth_bydepth.png
inst/outputs/Figure3_bydepth_bymonth/2018_17_05_Rootbiomass_bymonth_bydepth_1.png
inst/outputs/Figure3_bydepth_bymonth/2018_17_05_Rootbiomass_bymonth_bydepth_1_pdf.pdf inst/outputs/Figure3_bydepth_bymonth/2018_17_05_Rootbiomass_bymonth_bydepth_1_pdf_noYaxisLab.pdf
inst/outputs/Figure3_bydepth_bymonth/2018_17_05_Rootbiomass_bymonth_bydepth_bestone!.png
inst/outputs/Figure3_bydepth_bymonth/2018_17_05_Rootbiomass_bymonth_bydepth_no_labs.png
inst/outputs/Pub_figures/2018_03_09_Figure3_abovegroundpheon_notsmoothed.png
inst/outputs/Pub_figures/2018_03_09_Rootbiomass_bymonth.png
inst/outputs/Pub_figures/2018_10_07_Figure2_abovegroundpheon_smoothed_se.png
inst/outputs/Pub_figures/2018_17_05_Rootbiomass_bymonth_bydepth_w_labs.png
inst/outputs/Pub_figures/2018_17_05_Rootlength_bymonth_bydepth.png
inst/outputs/Pub_figures/2018_21_05_12Ofig_boxplot.png
inst/outputs/Pub_figures/Revisions/Aboveground_pheno_fig_revamp.png
inst/outputs/Pub_figures/Revisions/Aboveground_pheno_fig_revamp_BW_wSE_points.tiff
inst/outputs/Pub_figures/Revisions/Aboveground_pheno_fig_revamp_BW_wSE_points_triangles.tiff
inst/outputs/Pub_figures/Revisions/Aboveground_pheno_fig_revamp_color.png
inst/outputs/Pub_figures/Revisions/Aboveground_pheno_fig_revamp_color_wSE_points.tiff
inst/outputs/Pub_figures/Revisions/Aboveground_pheno_fig_revamp_color_wSE_points_triangles.tiff
inst/outputs/Pub_figures/Revisions/Fig_1_VWC_precip_redo.png
inst/outputs/Pub_figures/Revisions/Fig_1_VWC_precip_redo.tiff
inst/outputs/Pub_figures/Revisions/Fig_1_VWC_precip_redo_color.png
inst/outputs/Pub_figures/Revisions/Fig_1_VWC_precip_redo_color.tiff
inst/outputs/Pub_figures/Revisions/Label_legend_rootlengthcolor.tiff
inst/outputs/Pub_figures/Revisions/LegendColor_Biomass.png
inst/outputs/Pub_figures/Revisions/Legend_for_RootLength.png
inst/outputs/Pub_figures/Revisions/Mean_rootLength_multipanel.png
inst/outputs/Pub_figures/Revisions/Mean_rootLength_multipanel_BW_tri.tiff
inst/outputs/Pub_figures/Revisions/Mean_rootLength_multipanel_col_tri.tiff
inst/outputs/Pub_figures/Revisions/Mean_rootdiameter_multipanel.png
inst/outputs/Pub_figures/Revisions/RootBiomass_Figure_bydepthandtotal_BW.png
inst/outputs/Pub_figures/Revisions/RootBiomass_Figure_bydepthandtotal_BW.tiff
inst/outputs/Pub_figures/Revisions/RootBiomass_Figure_bydepthandtotal_Color.png
inst/outputs/Pub_figures/Revisions/Rootbiomass_forlegend_BW.png
inst/outputs/Pub_figures/Revisions/Rootbiomass_forlegend_BW.tiff
inst/outputs/Pub_figures/Revisions/test.png
man/Adenostoma_2016_mphillips_preprocessed.Rd man/Adenostoma_2016_mphillips_processed_noavg.Rd man/Adenostoma_2016_mphillips_processed_withavg.Rd man/CalculateBioDensity.Rd man/CalculateCarbonContent.Rd man/ConvertFrameDepth.Rd man/SDEF_root_ash_weights.Rd man/SDEF_root_data_raw.Rd man/SDEF_roots_post_aggregation_by_date.Rd man/SDEF_roots_post_aggregation_by_month.Rd man/SDEF_roots_post_aggregation_by_season_v1.Rd man/SDEF_roots_post_aggregation_by_season_v2.Rd man/SDEF_roots_post_aggregation_by_season_v3.Rd man/SDEF_roots_pre_aggregation.Rd man/SDEF_roots_pre_process.Rd vignettes/Adenostoma_2016_mphillips_preprocess.Rmd vignettes/Adenostoma_2016_mphillips_process.Rmd
vignettes/Pre-Processing 2016 Adenostoma Sapflux Data.html
vignettes/Pre-Processing 2016 Adenostoma Sapflux Data.pdf
vignettes/Processing 2016 Adenostoma Sapflux Data.html
vignettes/Processing 2016 Adenostoma Sapflux Data.pdf vignettes/SDEF_roots_post_aggregation.Rmd vignettes/SDEF_roots_pre_aggregation.Rmd vignettes/SDEF_roots_pre_process.Rmd
bmcnellis/SDEF.analysis documentation built on June 4, 2019, 10 a.m.