get_cor: Compute rho_ge
In bogdanlab/RHOGE: Genome-wide genetic correlation between two complex traits using TWAS effect-size estimates
Description
Usage
Arguments
Value
Description
Compute ρ_ge
Usage
1
2
get_cor(t1, t2, regions = grch37.eur.loci, min_regions = 10,
nsamples = 10)
Arguments
t1
data.frame-like, TWAS results for trait1
t2
data.frame-like, TWAS results for trait2
regions
data.frame-like, Approximate independent regions. Requires columns (Chr, Start, Stop). Default is estimated blocks in Europeans.
min_regions
integer, Minimum number of independent regions for inference
nsamples
integer, Number of samples to perform for bootstrapping
Value
data.frame with estimates
bogdanlab/RHOGE documentation built on May 25, 2019, 3:24 p.m.
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Description Usage Arguments Value
Description
Compute ρ_ge
Usage
1 2 | get_cor(t1, t2, regions = grch37.eur.loci, min_regions = 10,
nsamples = 10)
|
Arguments
t1 |
data.frame-like, TWAS results for trait1 |
t2 |
data.frame-like, TWAS results for trait2 |
regions |
data.frame-like, Approximate independent regions. Requires columns (Chr, Start, Stop). Default is estimated blocks in Europeans. |
min_regions |
integer, Minimum number of independent regions for inference |
nsamples |
integer, Number of samples to perform for bootstrapping |
Value
data.frame with estimates
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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