API for bomeara/BMhyb
Comparative Methods for Phylogenetic Networks
| Global functions | |
|---|---|
| AddHybridization | Man page Source code |
| AddNodeToPhygraph | Source code |
| AkaikeWeight | Source code |
| AlterMatrixUsingDE | Source code |
| BMhyb | Man page Source code |
| BMhybExhaustive | Man page Source code |
| BrissetteEtAlCorrection | Source code |
| ComputeAICc | Source code |
| ComputeAllEdges | Source code |
| ComputeConfidenceIntervals | Source code |
| ComputeLikelihood | Man page Source code |
| ComputeMeans | Source code |
| ComputePathPairs | Source code |
| ComputeVCV | Man page Source code |
| ContourFromAdaptiveSampling | Source code |
| ConvertEvonetToIgraphWithNodeNumbers | Man page Source code |
| ConvertExpm1 | Source code |
| ConvertLog1P | Source code |
| ConvertPhyAndFlowToPhygraph | Source code |
| ConvertVectorToMatrix | Source code |
| CreateHybridlessEvonet | Man page Source code |
| GenerateParamLabels | Source code |
| GenerateRandomPositiveDefiniteMatrix | Source code |
| GenerateValues | Source code |
| GetAllPathTopologies | Source code |
| GetConvexHull | Man page Source code |
| GetHybridNodes | Source code |
| GetProbabilityOfAllPaths | Source code |
| GetProbabilityOfIndividualPath | Source code |
| IsPositiveDefinite | Source code |
| LumpIntoClades | Source code |
| MergeExhaustiveForPlotting | Man page Source code |
| OptimizeThoroughly | Source code |
| PlotConvexHull | Source code |
| PositiveDefiniteOptimizationFn | Source code |
| PruneDonorsRecipientsFromMeans | Source code |
| PruneDonorsRecipientsFromVCV | Source code |
| PruneRecipientsFromPhyGraph | Source code |
| RenumberPhygraph | Source code |
| ScaleAllEdges | Source code |
| SimulateNetwork | Man page Source code |
| SimulateTips | Man page Source code |
| TryComputeLikelihood | Source code |
| cichlid | Man page |
| nicotiana | Man page |
| plot.BMhybExhaustiveResult | Man page Source code |
| plot.BMhybResult | Man page Source code |
| print.BMhybExhaustiveResult | Man page Source code |
| print.BMhybResult | Man page Source code |
| summary.BMhybExhaustiveResult | Man page Source code |
| summary.BMhybResult | Man page Source code |
