ConvertEvonetToIgraphWithNodeNumbers: Convert an evonet object into igraph

Description Usage Arguments Value Examples

View source: R/bmhyb.r

Description

ape can already convert from evonet to igraph; the advantage of this function is that it uses the node ids from the evonet object for labels in igraph.

Usage

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Arguments

phy.graph

An ape::evonet object (a phylogeny stored in phylo format that also includes a reticulation matrix)

Value

An igraph network

Examples

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phy <- ape::rcoal(5)
phy.evo <- ape::evonet(phy, from=1, to=2)
plot(phy.evo) # this is the ape plot
phy.igraph <- ConvertEvonetToIgraphWithNodeNumbers(phy.evo)
plot(phy.igraph)

bomeara/BMhyb documentation built on Aug. 15, 2018, 11:13 p.m.