AddHybridization | Add hybrid events to a phy.graph |
BMhyb | Optimize model |
BMhybExhaustive | Exhaustively evaluate models |
cichlid | Cichlid dataset |
ComputeLikelihood | Compute the likelihood for a set of parameters |
ComputeVCV | Compute the variance-covariance matrix |
ConvertEvonetToIgraphWithNodeNumbers | Convert an evonet object into igraph |
CreateHybridlessEvonet | Convert phylo object to evonet |
GetConvexHull | Get convex hull at a given threshold |
MergeExhaustiveForPlotting | Function to merge adaptive sampling sims for plotting |
nicotiana | Nicotiana dataset |
plot.BMhybExhaustiveResult | Plot BMhybExhaustive result |
plot.BMhybResult | Plot BMhyb result |
print.BMhybExhaustiveResult | Print BMhybExhaustive result |
print.BMhybResult | Print BMhyb result |
SimulateNetwork | Simulate a phylogenetic network |
SimulateTips | Simulate trait data |
summary.BMhybExhaustiveResult | Summarize BMhybExhaustive result |
summary.BMhybResult | Summarize BMhyb result |
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