PlotTransitionNetwork: PlotTransitionNetwork

In bomeara/RateViz: Visualizations for instantaneous rate matrices

Description

This plots a network showing transition rates between given states. It uses igraph for plotting.

Usage

PlotTransitionNetwork(Q, main = "", layout.fn = layout.circle, ...)

Arguments

Q	Instantaneous rate matrix
main	Title for plot (optional)
layout.fn	Layout function from igraph. By default this uses a circle layout, but you may use other igraph functions. layout.fruchterman.reingold may generate a good looking graph.
...	Other arguments to pass to plot.igraph()

Value

No return

Author(s)

Brian C. O'Meara

Examples

#A random sample transition matrix
Q <- matrix(runif(9), 3, 3)
diag(Q) <- 0
diag(Q) <- -rowSums(Q)
colnames(Q) <- c("A", "B", "C")
rownames(Q) <- c("A", "B", "C")
print(Q)
PlotTransitionNetwork(Q)

bomeara/RateViz documentation built on May 12, 2019, 11:34 p.m.