aggregate_category | Aggregate count by category |
check_continuous | Check a data.frame to see which columns are continuous |
check_numeric_vector | Check a vector to see if the elements are numeric |
contrasts_correlations | All pairwise correlations |
convert_continuous_to_discrete | Continuous to discrete |
eol_data | Query Encyclopedia of Life with a URL to return all data for... |
eol_traits | Collapse the data frame produced by eol_data to a single row... |
eol_traits2 | Collapse the data frame produced by eol_data to a single row... |
fishbase_genus_query | Get information on fish localities rfishbase |
fishbase_species_query | Get information on fish localities rfishbase |
gbif_species_query | Query gbif to return latitude and longitude for a vector of... |
gbif_taxon_query | Query gbif to return latitude and longitude for members of a... |
get_combie_image_summary | Get Wikipedia images |
get_datelife_all | Get all tree from datelife |
get_datelife_biggest | Get biggest tree from datelife |
get_descendant_species | Get all descendant species of the taxon |
get_eol | Get info from Encyclopedia of Life |
get_genbank_count | Information about the number of species in the clade in... |
get_genbank_count_by_gene | Get the count of number of sequences for different genes for... |
get_location_realm_biome | Get location, realm, and biome |
get_otol | Get info from Open Tree of Life |
get_pubmed | Get information on the clade from pubmed |
get_pubmed_count_only | Get information on the count of papers from pubmed |
get_pubmed_info_on_OTOL | Aggregate pubmed data down OToLtree |
get_wikipedia_pics | Get Wikipedia images |
get_wikipedia_summary | Get Wikipedia summary |
locality_add_habitat_biome | Use azizka/speciesgeocodeR/ and WWF data to encode locations... |
locality_clean | Clean locality information |
match_data | Get a tree and data, resolve to same set of taxa, and make a... |
pbdb_taxon_query | Get information on specimens from the paleobiology data base... |
phydo_convert_to_Beaulieu_data | Convert the phydo format to one usable for Beaulieu-style |
phydo_drop_type | Return a phydo object with only the selected kind of traits |
phydo_fitGeiger | Try geiger's fitContinuous or fitDiscrete on all the... |
plot_gis | Plot a map of points |
plot_pubmed_info_on_OTOL | Plot pubmed data down OToLtree |
reconstruct_apomorphy | Reconstruct an apomorphy down a tree using parsimony |
render_phydo | Create a file of results |
render_quarto | Create a file of results |
reroot.tree | Root a tree |
run_biogeobears | Run biogeobears analyses |
run_misse | Run misse analysis |
run_phydo | Do phydo analysis |
spocc_taxon_query | Query many sources at once using spocc to get latitude and... |
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