contrasts_correlations: All pairwise correlations
In bomeara/chapter2: Creates an Initial Report for a Clade
contrasts_correlations R Documentation
All pairwise correlations
Description
Use independent contrasts on each pair of traits. If a trait is missing for a taxon, drop that taxon for all analyses with that trait but not others. It runs cor.test on the positivized contrasts and returns the correlation, lower, and upper 95
Usage
contrasts_correlations(phy, traits)
Arguments
phy
A phylo object
traits
A data.frame of traits with first column as species
Value
A list with three objects: the correlations, lower, and upper.
bomeara/chapter2 documentation built on July 27, 2024, 10:35 p.m.
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| contrasts_correlations | R Documentation |
All pairwise correlations
Description
Use independent contrasts on each pair of traits. If a trait is missing for a taxon, drop that taxon for all analyses with that trait but not others. It runs cor.test on the positivized contrasts and returns the correlation, lower, and upper 95
Usage
contrasts_correlations(phy, traits)
Arguments
phy |
A phylo object |
traits |
A data.frame of traits with first column as species |
Value
A list with three objects: the correlations, lower, and upper.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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