Files in bomeara/phrapl
Phylogeography using Approximate Likelihood
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/phrapl-info.R
R/phrapl-plot.R
R/phrapl-search.R
R/phrapl-utilities.R
README.md
codecov.yml
data/MigrationArray_3pops_maxMigrationK1.rda
data/MigrationArray_3pops_maxMigrationK1_asymmetrical.rda
data/MigrationArray_3pops_maxMigrationK2.rda
data/MigrationArray_3pops_maxMigrationK2_asymmetrical.rda
data/MigrationArray_3pops_maxMigrationK3.rda
data/MigrationArray_3pops_maxMigrationK3_asymmetrical.rda
data/MigrationArray_3pops_maxMigrationK4_asymmetrical.rda
data/MigrationArray_4pops_maxMigrationK1.rda
data/MigrationArray_4pops_maxMigrationK2.rda
data/TestData.rda
inst/docs/dependencies_2017Workshop.R
inst/docs/index.html
inst/docs/phrapl_tutorial_2017Workshop.R
inst/docs/phrapl_vignette.Rmd
inst/docs/phrapl_vignette.html
inst/docs/phrapl_vignette.pdf
inst/extdata/InstallPhraplDependencies.R
inst/extdata/cladeAssignments.txt
inst/extdata/comparecladespipe.pl
inst/extdata/seqConverter.pl
inst/extdata/trees.tre
man/AddEventToMigrationArray.Rd
man/AddGrowthToAMigrationArray.Rd
man/CalculateGdi.Rd
man/CalculateModelAverages.Rd
man/ConcatenateResults.Rd
man/ConvertStructureDataToTrees.Rd
man/Data.Rd
man/GenerateMigrationArrayMap.Rd
man/GenerateMigrationIndividuals.rd
man/GenerateMigrationIndividualsOneAtATime.Rd
man/GetPermutationWeightsAcrossSubsamples.Rd
man/GridSearch.Rd
man/MergeTrees.Rd
man/MsIndividualParameters.Rd
man/PlotModel.Rd
man/PlotModel2D.Rd
man/PrepSubsampling.Rd
man/PrepSubsamplingFiles.Rd
man/ReadStructureData.Rd
man/RunRaxml.Rd
man/RunSeqConverter.Rd
man/SaveMovie.Rd
man/phrapl-example.Rd
man/phrapl-internal.Rd
man/phrapl-package.Rd
tests/testthat.R
tests/testthat/test-phrapl_basic.R
vignettes/.gitignore
vignettes/phrapl_vignette.Rmd
