R/TcGSA-package.R

#'Time-course Gene Set Analysis
#'
#'This package implements TcGSA, an algorithm to analyze longitudinal gene-expression data at the gene set level.
#'
#'
#'\tabular{ll}{
#'Package: \tab TcGSA\cr
#'Type: \tab Package\cr
#'Version: \tab 0.10.7\cr
#'Date: \tab 2017-12-05\cr
#'License:\tab \href{http://www.gnu.org/licenses/lgpl.txt}{LGPL-3}\cr
#'}
#'The main function in this package is \code{\link{TcGSA.LR}} which performs Time-course Gene Set Analysis, and provide nice representations of its results (see \code{\link{plot.TcGSA}} and \code{\link{plot1GS}}).
#'
#'@author Boris P. Hejblum, Damien Chimits
#'--- Maintainer: Boris P. Hejblum
#'
#'@references Hejblum BP, Skinner J, Thiebaut R, (2015)
#'Time-Course Gene Set Analysis for Longitudinal Gene Expression Data.
#'\emph{PLoS Computat. Biol.} 11(6): e1004310.
#'doi: 10.1371/journal.pcbi.1004310
#'
#'@seealso \code{\link[GSA:GSA]{GSA}} \code{\link[tcgsaseq:tcgsaseq]{tcgsaseq}}
#'
#'@importFrom GSA GSA.read.gmt
#'
#'@docType package
#'@name TcGSA-package
#'@aliases TcGSA
#'
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borishejblum/TcGSA documentation built on Dec. 6, 2017, 2:04 p.m.