sim.haplotype: Simulate artificial haplotypes.
In bowenwang7/r3: Realized Relatedness Estimation and Simulation
Description
Usage
Arguments
Details
Value
Examples
Description
sim.haplotype returns haplotypes of the specified number of SNPs simulated under linkage equilibrium.
Usage
1
sim.haplotype(freq, nhaplo)
Arguments
freq
vector of values between 0 and 1.
nhaplo
positive integer.
Details
freq are reference allele frequencies. nhaplo haplotypes are simulated independently.
Value
A matrix of nhaplo rows and length(freq) columns. Reference alleles are coded 1, alternate alleles are coded 2.
Examples
1
2
3
4
nsnp = 7 # number of SNPs
freq = runif(nsnp, 0.05, 0.95)
nhaplo = 4 # number of founder haplotypes
sim.haplotype(freq, nhaplo)
bowenwang7/r3 documentation built on May 17, 2019, 6:39 p.m.
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Description Usage Arguments Details Value Examples
Description
sim.haplotype returns haplotypes of the specified number of SNPs simulated under linkage equilibrium.
Usage
1 | sim.haplotype(freq, nhaplo)
|
Arguments
freq |
vector of values between 0 and 1. |
nhaplo |
positive integer. |
Details
freq are reference allele frequencies. nhaplo haplotypes are simulated independently.
Value
A matrix of nhaplo rows and length(freq) columns. Reference alleles are coded 1, alternate alleles are coded 2.
Examples
1 2 3 4 | nsnp = 7 # number of SNPs
freq = runif(nsnp, 0.05, 0.95)
nhaplo = 4 # number of founder haplotypes
sim.haplotype(freq, nhaplo)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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