read_metal: Read association summary statistics from file and append...
In boxiangliu/locuscomparer: locuscomparer: Visualization of GWAS-QTL Colocalization Events
read_metal R Documentation
Read association summary statistics from file and append column.
The file must contain 2 columns: markers, i.e SNPs, and p-value.
The marker column should contain SNP rsIDs.
Description
Read association summary statistics from file and append column.
The file must contain 2 columns: markers, i.e SNPs, and p-value.
The marker column should contain SNP rsIDs.
Usage
read_metal(in_fn, marker_col = "rsid", pval_col = "pval")
Arguments
in_fn
(string) Path to the input file.
marker_col
(string, optional) Name of the marker column. Default: 'rsid'.
pval_col
(string, optional) Name of the p-value column. Default: 'pval'.
Examples
in_fn = system.file('extdata', 'gwas.tsv', package = 'locuscomparer')
d1 = read_metal(in_fn, marker_col = 'rsid', pval_col = 'pval')
boxiangliu/locuscomparer documentation built on Nov. 27, 2022, 7:26 a.m.
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| read_metal | R Documentation |
Read association summary statistics from file and append column. The file must contain 2 columns: markers, i.e SNPs, and p-value. The marker column should contain SNP rsIDs.
Description
Read association summary statistics from file and append column. The file must contain 2 columns: markers, i.e SNPs, and p-value. The marker column should contain SNP rsIDs.
Usage
read_metal(in_fn, marker_col = "rsid", pval_col = "pval")
Arguments
in_fn |
(string) Path to the input file. |
marker_col |
(string, optional) Name of the marker column. Default: 'rsid'. |
pval_col |
(string, optional) Name of the p-value column. Default: 'pval'. |
Examples
in_fn = system.file('extdata', 'gwas.tsv', package = 'locuscomparer')
d1 = read_metal(in_fn, marker_col = 'rsid', pval_col = 'pval')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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