Man pages for bozenne/lava.penalty
Penalized Latent Variable Models
| addLink | Add a new link between two variables in a lvm |
| calcLambda | Estimate the regularization parameter |
| cancelPenalty | Remove penalty from a penalized latent variable model |
| checkData | Check that validity of the dataset |
| clean.penalty | Simplify a lvm object |
| coef0 | Extract Model Coefficients |
| cvCheck | Test the sensibility of the lvm estimate to the... |
| dfNuclear | Compute the degree of freedom for nuclear regularized... |
| EPSODE | Perform the generic Path Algorithm for a LVM |
| estimate | Penalized lvm model |
| extractCoef | Extract the specific coefficient names or positions in a LVM |
| findNewLink | Find the new possible links between variables (copied from... |
| getIvar.lvm | Extract the variables related to each parameter |
| getPath | Get the regularization path |
| initGroup.lvm | Reshape information for building the V matrices |
| initialize | Intialization functions for plvm models |
| initializeData | Scale the dataset and convert categorical variables to... |
| initializeOperator | Initialise a proximal operator |
| initPenalty | Initialize penalty terms |
| kill.penalty | Remove penalty after removing a variable |
| lassoTest | Significance test for the lasso |
| lavaPenalty | lavaPenalty: Regularization tools for latent variables models |
| lavaPenalty.estimate.hook | Hook to estimate a penalized lvm model |
| lavaPenalty.multigroup.hook | Hook to estimate a multigroup penalized lvm model |
| lavaPenalty.options | Set global options for lavaPenalty |
| LCSseq | Common substring sequence |
| link2dummy | Convert variable names to dummy variables names |
| loadings | Extract the summary table for the loadings |
| lvm2plvm | Conversion to a penalized latent variable model |
| onload | Default Options for lavaPenalty |
| optim.EPSODE | Regularization path |
| optim.Nuisance.plvm | Estimate nuisance parameter |
| optim.proxGrad | Proximal gradient algorithm |
| p2j | Extract the column index from a sparse matrix |
| penalize | Penalize a latent variable model |
| penaltyExtract | Extract the penalty from a lvm object |
| penaltyUpdate | Update the penalty term |
| print.penalize | Display the content of a penalized object |
| proxGrad | Proximal gradient algorithm |
| proximalOperators | Proximal operators |
| Qbound | Estimate an upper bound of obj.x |
| reduce | Aggregate exogeneous variables associated with penalties |
| renameFactor | Link levels and coefficients |
| setLink | Affect a given value to a link between two variables in a lvm |
| simForm | Spatial simulation |
| summary.cvlvm | Summary function associated with cvCheck |
