Files in bpbond/cosore
Continuous Soil Respiration Database
.Rbuildignore
.github/.gitignore
.github/workflows/check-standard.yaml
.github/workflows/test-coverage.yaml
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/one-time-transforms.R
R/parse-LI8100.R
R/parse-others.R
R/parse-processed.R
R/parser.R
R/qaqc.R
R/release.R
R/reports.R
R/sysdata.rda
R/user.R
R/utils.R
R/zzz.R
README.md
cosore.Rproj
gcb/.gitignore
gcb/authors_from_google_sheets.csv
gcb/figures/figure1-structure.graffle
gcb/gcb_ms.Rmd
gcb/igbp_abbreviations.csv
inst/.DS_Store
inst/CITATION
inst/extdata/.gitignore
inst/extdata/CSR_COLUMN_UNITS.csv
inst/extdata/Metadata_Form_Responses.csv
inst/extdata/README.md
inst/extdata/TEMPLATE/ANCILLARY.csv
inst/extdata/TEMPLATE/COLUMNS.txt
inst/extdata/TEMPLATE/CONTRIBUTORS.txt
inst/extdata/TEMPLATE/DESCRIPTION.txt
inst/extdata/TEMPLATE/PORTS.txt
inst/extdata/database_growth.csv
inst/extdata/datasets/TEST_custom/ANCILLARY.csv
inst/extdata/datasets/TEST_custom/COLUMNS.txt
inst/extdata/datasets/TEST_custom/CONTRIBUTORS.txt
inst/extdata/datasets/TEST_custom/DESCRIPTION.txt
inst/extdata/datasets/TEST_custom/PORTS.txt
inst/extdata/datasets/TEST_custom_missing/ANCILLARY.csv
inst/extdata/datasets/TEST_custom_missing/COLUMNS.txt
inst/extdata/datasets/TEST_custom_missing/CONTRIBUTORS.txt
inst/extdata/datasets/TEST_custom_missing/DESCRIPTION.txt
inst/extdata/datasets/TEST_custom_missing/PORTS.txt
inst/extdata/datasets/TEST_licordata/ANCILLARY.csv
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inst/extdata/datasets/TEST_licordata/CONTRIBUTORS.txt
inst/extdata/datasets/TEST_licordata/DESCRIPTION.txt
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inst/extdata/datasets/d20200423_OYONARTE/CONTRIBUTORS.txt
inst/extdata/datasets/d20200423_OYONARTE/DESCRIPTION.txt
inst/extdata/datasets/d20200423_OYONARTE/PORTS.txt
inst/extdata/datasets/d20200423_OYONARTE/data/data.RDS
inst/extdata/datasets/d20200423_OYONARTE/data/diag.RDS
inst/extdata/datasets/d20200423_SANCHEZ-CANETE/ANCILLARY.csv
inst/extdata/datasets/d20200423_SANCHEZ-CANETE/COLUMNS.txt
inst/extdata/datasets/d20200423_SANCHEZ-CANETE/CONTRIBUTORS.txt
inst/extdata/datasets/d20200423_SANCHEZ-CANETE/DESCRIPTION.txt
inst/extdata/datasets/d20200423_SANCHEZ-CANETE/PORTS.txt
inst/extdata/datasets/d20200423_SANCHEZ-CANETE/data/data.RDS
inst/extdata/datasets/d20200423_SANCHEZ-CANETE/data/diag.RDS
inst/extdata/datasets/d20200808_MINIAT/ANCILLARY.csv
inst/extdata/datasets/d20200808_MINIAT/COLUMNS.txt
inst/extdata/datasets/d20200808_MINIAT/CONTRIBUTORS.txt
inst/extdata/datasets/d20200808_MINIAT/DESCRIPTION.txt
inst/extdata/datasets/d20200808_MINIAT/PORTS.txt
inst/extdata/datasets/d20200808_MINIAT/data/data.RDS
inst/extdata/datasets/d20200808_MINIAT/data/diag.RDS
inst/extdata/datasets/d20200825_MINIAT/ANCILLARY.csv
inst/extdata/datasets/d20200825_MINIAT/COLUMNS.txt
inst/extdata/datasets/d20200825_MINIAT/CONTRIBUTORS.txt
inst/extdata/datasets/d20200825_MINIAT/DESCRIPTION.txt
inst/extdata/datasets/d20200825_MINIAT/PORTS.txt
inst/extdata/datasets/d20200825_MINIAT/data/data.RDS
inst/extdata/datasets/d20200825_MINIAT/data/diag.RDS
inst/extdata/datasets/d20201013_LIANG/ANCILLARY.csv
inst/extdata/datasets/d20201013_LIANG/COLUMNS.txt
inst/extdata/datasets/d20201013_LIANG/CONTRIBUTORS.txt
inst/extdata/datasets/d20201013_LIANG/DESCRIPTION.txt
inst/extdata/datasets/d20201013_LIANG/PORTS.txt
inst/reports/combined_report.Rmd
inst/reports/dataset_report.Rmd
man/TSM_change.Rd
man/add_flux_columns.Rd
man/add_port_column.Rd
man/calc_timestamps.Rd
man/check_dataset_names.Rd
man/check_file_description_consistency.Rd
man/compute_interval.Rd
man/convert_ancillary_timestamps.Rd
man/convert_and_qc_timestamp.Rd
man/convert_to_numeric.Rd
man/csr_build.Rd
man/csr_database.Rd
man/csr_dataset.Rd
man/csr_make_release.Rd
man/csr_metadata.Rd
man/csr_remove_stan_data.Rd
man/csr_report_database.Rd
man/csr_report_dataset.Rd
man/csr_reports_all.Rd
man/csr_standardize_data.Rd
man/csr_table.Rd
man/embargoed.Rd
man/extract_line.Rd
man/extract_table.Rd
man/fractional_doy.Rd
man/gases_string.Rd
man/insert_defaults.Rd
man/insert_line.Rd
man/list_datasets.Rd
man/map_columns.Rd
man/minigather.Rd
man/parse_LI-8100A_RAW.Rd
man/parse_LI8100_file.Rd
man/parse_LI8100_record.Rd
man/parse_PROCESSED.Rd
man/parse_PROCESSED_CSV.Rd
man/parse_d20190430_DESAI.Rd
man/parse_d20190504_SAVAGE_hf006-03.Rd
man/parse_d20190504_SAVAGE_hf006-05.Rd
man/parse_d20190527_GOULDEN.Rd
man/parse_d20190617_SCOTT_SRM.Rd
man/parse_d20190617_SCOTT_WHS.Rd
man/parse_d20190617_SCOTT_WKG.Rd
man/parse_d20190617_SCOTT_xxx.Rd
man/parse_d20190830_LIANG.Rd
man/parse_d20190919_MIGLIAVACCA.Rd
man/parse_d20200108_JASSAL.Rd
man/parse_d20200109_HIRANO_PDB.Rd
man/parse_d20200109_HIRANO_PDF.Rd
man/parse_d20200109_HIRANO_PUF.Rd
man/parse_d20200122_BLACK.Rd
man/parse_d20200212_ATAKA.Rd
man/parse_d20200214_SZUTU_BOULDINC.Rd
man/parse_d20200214_SZUTU_TONZI.Rd
man/parse_d20200214_SZUTU_VAIRA.Rd
man/parse_d20200228_RENCHON.Rd
man/parse_d20200229_PHILLIPS.Rd
man/parse_d20200305_VARGAS.Rd
man/parse_d20200328_UEYAMA_FAIRBANKS.Rd
man/parse_d20200328_UEYAMA_HOKUROKU.Rd
man/parse_d20200328_UEYAMA_TESHIO.Rd
man/parse_d20200328_UEYAMA_YAMASHIRO.Rd
man/parse_d20200407_WANG.Rd
man/parse_d20200419_PEREZ-QUEZADA.Rd
man/parse_d20200423_OYONARTE.Rd
man/parse_d20200423_SANCHEZ-CANETE.Rd
man/parse_d20200825_MINIAT.Rd
man/qaqc_data.Rd
man/rbind_list.Rd
man/read_ancillary_file.Rd
man/read_columns_file.Rd
man/read_contributors_file.Rd
man/read_csv_data.Rd
man/read_dataset.Rd
man/read_description_file.Rd
man/read_file.Rd
man/read_ports_file.Rd
man/read_raw_dataset.Rd
man/rearrange_columns.Rd
man/remove_empty_columns.Rd
man/remove_invalid_timestamps.Rd
man/resolve_dataset.Rd
man/split_licor_file.Rd
man/substitute_release_info.Rd
man/write_dataset_data.Rd
man/write_stan_data.Rd
misc/BADM-Site_General_Info-v2019-Template.xlsx
misc/COSORE submission - [questions and] upload link for $DATASET.emltpl
misc/COSORE_publications.txt
misc/EMAIL_AFTER_METADATA.txt
misc/EMAIL_AMERIFLUX.txt
misc/EMAIL_COLD_CONTACT.txt
misc/cold_emails.csv
tests/testthat.R
tests/testthat/test_dataset_read.R
tests/testthat/test_file-parsing.R
tests/testthat/test_make_release.R
tests/testthat/test_parse_processed.R
tests/testthat/test_qaqc.R
tests/testthat/test_raw_crvfitstatus/README.md
tests/testthat/test_raw_crvfitstatus/rp7_crvfitstatus.txt
tests/testthat/test_raw_custom/TEST_custom/README.md
tests/testthat/test_raw_custom/TEST_custom_missing/README.md
tests/testthat/test_raw_data/TEST_licordata/SALT_20181005_LT.81x
tests/testthat/test_raw_problems/README.md
tests/testthat/test_raw_problems/rp1_malformed1.txt
tests/testthat/test_raw_problems/rp1_malformed2.txt
tests/testthat/test_raw_problems/rp1_malformed3.txt
tests/testthat/test_raw_problems/rp2_no_table.txt
tests/testthat/test_raw_problems/rp3_read_table_error.txt
tests/testthat/test_raw_problems/rp4_licor_error.txt
tests/testthat/test_raw_problems/rp5_no_valid_data.txt
tests/testthat/test_raw_problems/rp6_empty_file.txt
tests/testthat/test_user.R
tests/testthat/test_utils.R
vignettes/.gitignore
vignettes/cosore-data-example.Rmd
