Files in bpollner/flowdex

Extract Fluorescence Distribution Data from FCS Files and Recalculate to Events per Volume

.Rbuildignore

.Rproj.user/6B6AC6A8/cpp-definition-cache

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DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/cl_classDefs.R R/cl_classFunctions.R R/flowdex.R R/gen-functions.R R/gen_accessories.R R/gen_f_Inner.R R/globals.R R/helpers.R R/uniset_functions.R R/zzz.R README.md

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cran-comments.md

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docs/articles/accessory.html

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docs/articles/acknowledgements.html

docs/articles/acquire-data.html

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docs/articles/description.html

docs/articles/flowdex.html

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docs/articles/set-up-tutorial.html

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docs/articles/workflow_1.html

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docs/reference/class-cyTags.html

docs/reference/class-eventsPV.html

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flowdex.Rproj

index.md inst/flowdex_settings.R

inst/templates/dictionary.xlsx

inst/templates/gateDef

inst/templates/gateStrat.xlsx

inst/testHelpers/dictionary/dictionary.xlsx

inst/testHelpers/dictionary/dictionary_double.xlsx

inst/testHelpers/dictionary/dictionary_miss.xlsx

inst/testHelpers/fcsFiles/N_na_SiteN_T02_th1_b4.fcs

inst/testHelpers/fcsFiles/N_na_SiteP_T02_th1_b7.fcs

inst/testHelpers/fcsFiles/N_na_SiteP_T02_th2_b7.fcs

inst/testHelpers/fcsFiles/N_na_SiteP_T02_th3_b4.fcs

inst/testHelpers/fcsFiles/N_na_SiteP_T02_th3_b5.fcs

inst/testHelpers/fcsFiles/N_na_SiteP_T02_th3_b7.fcs

inst/testHelpers/gates/BactStain_pn1

inst/testHelpers/gates/BactStain_pn3

inst/testHelpers/gates/NotSelect

inst/testHelpers/gates/Select

inst/testHelpers/gates/gateStrat.csv

inst/testHelpers/gates/gateStrat.xlsx

inst/testHelpers/gates/gateStrat2.csv

inst/testHelpers/gates/gateStrat2.xlsx

inst/testHelpers/gates/gateStrat_all_FALSE.csv

inst/testHelpers/gates/gateStrat_keep.csv

inst/testHelpers/gates/gateStrat_keep.xlsx

inst/testHelpers/gates/gateStrat_wrongColnames.csv

inst/testHelpers/gates/highSSC_pn2

inst/testHelpers/gates/polyGate

inst/testHelpers/gates/polyGate_test

inst/testHelpers/orb4/BactStainV3

inst/testHelpers/orb4/HighSSC_FITC_V1

inst/testHelpers/orb4/HighSSC_FSC_V1

inst/testHelpers/orb4/UnstainedV1

inst/testHelpers/orb4/dictionary.xlsx

inst/testHelpers/orb4/gateStrat.xlsx

inst/testHelpers/settingsFile/flowdex_settings_manip_dic_FALSE.R inst/testHelpers/settingsFile/flowdex_settings_manip_dic_vol_FALSE.R inst/testHelpers/settingsFile/flowdex_settings_manip_igp_20.R inst/testHelpers/settingsFile/flowdex_settings_manip_vol_FALSE.R inst/testHelpers/settingsFile/flowdex_settings_original.R man-roxygen/example_linkToWeb.R man-roxygen/t_ex_assign.R man-roxygen/t_ex_finale.R man-roxygen/t_ex_intro.R man/addGates.Rd man/applyBandpass.Rd man/checkRepairFcsFiles.Rd man/check_download_data.Rd man/class-GatingSet_fd.Rd man/class-cyTags.Rd man/class-eventsPV.Rd man/class-fdmat.Rd man/class-fdmat_single.Rd man/class-gatingStrategy_fd.Rd man/cutFdmatToGate.Rd man/drawGate.Rd man/exportFdmatData.Rd man/fd_load.Rd man/fd_save.Rd man/fd_update_settings.Rd

man/figures/logo.png

man/flowdex.Rd man/flowdexit.Rd man/genfs.Rd man/getEventsPerVolume.Rd man/makeAddGatingSet.Rd man/makeGatingSet.Rd man/makefdmat.Rd man/plotFlscDist.Rd man/plotgates.Rd man/repairSID.Rd man/repairVolumes.Rd man/setup_settings.Rd

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tests/testthat.R tests/testthat/test-gen_functions.R

vignettes/.gitignore

vignettes/accessory.Rmd vignettes/acknowledgements.Rmd vignettes/acquire_data.Rmd vignettes/bottled_water.Rmd vignettes/description.Rmd vignettes/flowdex.Rmd vignettes/workflow_1.Rmd vignettes/workflow_2.Rmd

bpollner/flowdex documentation built on March 31, 2022, 3:21 a.m.