class-fdmat: Class 'fdmat'

In bpollner/flowdex: Extract Fluorescence Distribution Data from FCS Files and Recalculate to Events per Volume

Class 'fdmat'

Description

Contains a list, and within each list element there is an object of class 'fdmat_single', holding in turn the fluorescence distributions. For each gate in the gating strategy where 'keepData' is set to TRUE there is one list element in 'fdmat'.

Slots

.Data

A list with the same length as there are gates, i.e. with the same length as there are rows in the data frame in the slot metadata.

metadata

A data frame holding the metadata, i.e. the parameters used to calculate the fluorescense intensities. Most of these parameters can be set in the file 'flowdex_settings.R'.

cyTags

An object of class-cyTags

gateStrat

An object of class-gatingStrategy_fd

pData

A data frame holding the pheno-data, i.e. the data showing the raw sample-ID and the volume data stored in each single fcs file.

note

Character. Displaying comments like e.g. if applyBandpass was applied to data from a gate.

See Also

Other Class documentation: class-GatingSet_fd, class-cyTags, class-eventsPV, class-fdmat_single, class-gatingStrategy_fd

bpollner/flowdex documentation built on March 31, 2022, 3:21 a.m.