read_qiime2_metadata: Read QIIME 2 data

In bramstone/qSIP: Quantitative stable isotope probing for microbial ecology

Read QIIME 2 data

Description

Reads TSV or txt files used as QIIME 2 metadata

Usage

read_qiime2_metadata(
  file,
  barcodes = FALSE,
  stringsAsFactors = TRUE,
  run_names = c()
)

Arguments

file	The name of the file(s) which the data are to be read from. After ignoring any redundant headers, each row of the table appears as one line from the file(s). If there is no absolute path, the file name(s) will be relative to the current working directory, getwd(). Tilde-expansion is performed where supported. This can be a compressed file (see connections).
barcodes	Logical value indicating whether or not to keep barcodes and linker sequences.
stringsAsFactors	Logical: should the character vector be converted to a factor? This tag excludes the first column of sample ID names and any possible description columns (see details below).
run_names	Character vector specifying an identifying name for each run to be read in. This will create a Run column in the resulting data frame

Details

Some details

Value

read_qiime2_metadata returns a data frame from either a single or multiple QIIME2-formatted metadata tables.

Examples

to go here

bramstone/qSIP documentation built on Nov. 22, 2023, 9:11 p.m.