FERG - 2015 revision

Description Usage Arguments Value See Also

Functions to plot a worldmap of available and missing data; to summarize imputation results; to calculate total (ie, raw+imputed) cases; and to generate a PDF report of the imputation activity.

plot_missing(inc, WHOsub, agent, agent_full, save = FALSE)

summarize_imputation(db, db_imputed)

get_total_cases(db_merged, pop)

imputation_report(db, db_imputed, db_merged, pop, agent, agent_full,
                  tab1_options = NULL, tab2_options = NULL)

`inc`	vector of mean raw incidences
`WHOsub`	vector of WHO subregions
`agent`	agent name, abbreviated
`agent_full`	agent name, full
`save`	logical flag; should image be saved?
`db_merged`	merged data frame
`pop`	vector of population size by country (*1e5)
`db`	raw data frame
`db_imputed`	imputed data frame
`tab1_options`	list of formatting options for tables of absolute numbers
`tab2_options`	list of formatting options for tables of rates

get_total_cases returns a data frame with WHO subregion; mean, median, 2.5th percentile, 97.5th percentile, and standard deviation of overall subregional number of cases; and subregional population size. summarize_imputation returns a list of regional fit; global geometric mean; within-region variance; and between-region variance.plot_missing creates a PNG file (if save = FALSE); imputation_report generates a PDF file.

imputation-functions for main imputation functions.

brechtdv/FERG2015 documentation built on May 13, 2019, 5:05 a.m.