Files in brendanf/inferrnal
Interface to Call Programs from Infernal RNA Covariance Model Package
.BBSoptions
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
INSTALL
LICENSE
NAMESPACE
NEWS.md
R/args_util.R
R/example_data.R
R/inferrnal.R
R/read_stockholm_msa.R
R/stockholm_msa.R
R/write_stockholm_msa.R
README.Rmd
README.md
codecov.yml
inst/extdata/RF00002.cm
inst/extdata/RF00002.stk
inst/extdata/samp_5_8S.fasta
inst/extdata/sample.fasta
inst/extdata/sample.stk
man/StockholmMultipleAlignment-class.Rd
man/cm_5_8S.Rd
man/cmalign.Rd
man/cmbuild.Rd
man/cmcalibrate.Rd
man/cmsearch.Rd
man/read_stockholm_msa.Rd
man/sample_data.Rd
man/stk_5_8S.Rd
man/writeStockholmMultipleAlignment.Rd
tests/testthat.R
tests/testthat/_snaps/cmsearch.md
tests/testthat/cmalign_GC_RF.RDS
tests/testthat/cmalign_GC_SS_cons.RDS
tests/testthat/cmalign_GR_PP.RDS
tests/testthat/cmalign_alignment.RDS
tests/testthat/cmalign_rna
tests/testthat/cmsearch
tests/testthat/msa_GC_RF.RDS
tests/testthat/msa_GC_SS_cons.RDS
tests/testthat/msa_GF.RDS
tests/testthat/msa_GR_PP.RDS
tests/testthat/msa_alignment.RDS
tests/testthat/test-StockholmMultipleAlignment.R
tests/testthat/test-args_util.R
tests/testthat/test-cmalign.R
tests/testthat/test-cmbuild.R
tests/testthat/test-cmsearch.R
tests/testthat/test-read_stockholm_msa.R
tests/testthat/test-test_parse_stockholm_msa_chunk.R
tests/testthat/test-write_stockholm.R
tests/testthat/test.stk
vignettes/inferrnal.Rmd
