stk_5_8S: Annotated Seed Alignment for 5.8S rRNA

View source: R/example_data.R

stk_5_8SR Documentation

Annotated Seed Alignment for 5.8S rRNA

Description

This is a convenience function to return the path the seed alignment for the RFAM 5.8S rRNA covariance model, for use in cmbuild(). The original file is from https://rfam.xfam.org/family/RF00002/stockholm.

Usage

stk_5_8S()

Value

(character string) the path to the stk file

Examples

    cmbuild(
        msafile = stk_5_8S(),
        cmfile_out = "/dev/null",
        force = TRUE,
        quiet = FALSE
    )

brendanf/inferrnal documentation built on Sept. 30, 2024, 6:40 a.m.