stk_5_8S: Annotated Seed Alignment for 5.8S rRNA
In brendanf/inferrnal: Interface to Call Programs from Infernal RNA Covariance Model Package
stk_5_8S R Documentation
Annotated Seed Alignment for 5.8S rRNA
Description
This is a convenience function to return the path the seed alignment for the
RFAM 5.8S rRNA covariance model,
for use in cmbuild().
The original file is from
https://rfam.xfam.org/family/RF00002/stockholm.
Usage
stk_5_8S()
Value
(character string) the path to the stk file
Examples
cmbuild(
msafile = stk_5_8S(),
cmfile_out = "/dev/null",
force = TRUE,
quiet = FALSE
)
brendanf/inferrnal documentation built on Feb. 4, 2023, 4:49 p.m.
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| stk_5_8S | R Documentation |
Annotated Seed Alignment for 5.8S rRNA
Description
This is a convenience function to return the path the seed alignment for the
RFAM 5.8S rRNA covariance model,
for use in cmbuild().
The original file is from
https://rfam.xfam.org/family/RF00002/stockholm.
Usage
stk_5_8S()
Value
(character string) the path to the stk file
Examples
cmbuild(
msafile = stk_5_8S(),
cmfile_out = "/dev/null",
force = TRUE,
quiet = FALSE
)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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