read_stockholm_msa: Parse a Multiple Alignment in Stockholm Format
In brendanf/inferrnal: Interface to Call Programs from Infernal RNA Covariance Model Package
View source: R/read_stockholm_msa.R
read_stockholm_msa R Documentation
Parse a Multiple Alignment in Stockholm Format
Description
Parses Stockholm-format multiple alignment files, including "#=GC"
lines. Other annotations are ignored.
Usage
read_stockholm_msa(stockholm, type = c("RNA", "DNA", "AA"))
Arguments
stockholm
(character scalar) Path to a file to parse
type
(character scalar) Type of alignment; "RNA", "DNA", or "AA".
Value
a StockholmMultipleAlignment
Examples
msafile <- sample_rRNA_stk()
msa <- read_stockholm_msa(msafile)
msa
brendanf/inferrnal documentation built on Feb. 4, 2023, 4:49 p.m.
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View source: R/read_stockholm_msa.R
| read_stockholm_msa | R Documentation |
Parse a Multiple Alignment in Stockholm Format
Description
Parses Stockholm-format multiple alignment files, including "#=GC"
lines. Other annotations are ignored.
Usage
read_stockholm_msa(stockholm, type = c("RNA", "DNA", "AA"))
Arguments
stockholm |
( |
type |
( |
Value
a StockholmMultipleAlignment
Examples
msafile <- sample_rRNA_stk()
msa <- read_stockholm_msa(msafile)
msa
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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