MiRNAname: MiRNAname

In brengong/ConservationtextmineR:

Description

Removes the species designation from the miRNA name and adds it to a new column on a data.frame Requires a data.table with the column housing the miRNA labelled "miRNA_Name"

Usage

MiRNAname(miDT)

Arguments

miDT	a data table with one column labeled miRNA_Name

Value

A data table containing the following columns:

Author(s)

Brendan Gongol

Examples

miRNA_Name <- c("hsa-let-7","cel-lin-4","aae-mir-1","bol-mir-2","rno-mir-34","cel-mir-35",
               "cel-let-7-5p", "cel-let-7-3p", "cel-lin-4-5p", "cel-lin-4-3p", "cel-miR-1-5p", "ame-miR-9895",
               "hsa-miR-9896", "rno-miR-3478", "mmu-miR9897-5p", "cre-miR9897-3p")
MiRNADT<- data.frame(cbind(miRNA_Name))
MiRNAname(MiRNADT)

Sequence <- c("UAGCGAUUGGAUCCGGUGAGGUAGUAGGUUGUAUAGUUUGGAAUAUUACCACCGGUGAACUAUGCAAUUUUCUACCUUACCGGAGACAGAACUCUUCGA",
             "AUGCUUCCGGCCUGUUCCCUGAGACCUCAAGUGUGAGUGUACUAGCGAUGCUUCACACCUGGGCUCUCCGGGUACCAGGACGGUUUGAGCAGAU",
             "AAAGUGACCGUACCGAGCUGCAUACUUCCUUACAUGCCCAUACUAUAUCAUAAAUGGAUAUGGAAUGUAAAGAAGUAUGUAGAACGGGGUGGUAGU ",
             "UAAACAGUAUACAGAAAGCCAUCAAAGCGGUGGUUGAUGUGUUGCAAAUUAUGACUUUCAUAUCACAGCCAGCUUUGAUGUGCUGCCUGUUGCACUGU",
             "CGGACAAUGCUCGAGAGGCAGUGUGGUUAGCUGGUUGCAUAUUUCCUUGACAACGGCUACCUUCACUGCCACCCCGAACAUGUCGUCCAUCUUUGAA",
             "UAGCGAUUCAGAUCGAGCCAUUGCUGGUUUCUUCCACAGUAGCGAUUUCCAUUAGAACUAUCACCGGGUGGAAACUAGCAGUGGCUCGAUUAGCGAU",
             "UGAGGUAGUAGGUUGUAUAGUU", "CUAUGCAUAGCGAUACCUUACC", "UCCCUGAGACCUCAAGUGUGA", "ACACCUGGGCUCUCCGGGUACC",
             "UAGCGAUCCUUACAUGCCCAUA", "UCGUGUCCGUUUCUCGUUUCGA", "ACAAUAAUCGGACACUAGCGAU", "CACACCGGACGAGAUUUCAU",
             "UACCGGGCGUGGGGAGGGCAGG", "UAGCGAUUCCUUCUUAGCGAU")
miRNA_Name <- c("hsa-let-7","cel-lin-4","aae-mir-1","bol-mir-2","rno-mir-34","cel-mir-35",
               "cel-let-7-5p", "cel-let-7-3p", "cel-lin-4-5p", "cel-lin-4-3p", "cel-miR-1-5p", "ame-miR-9895",
               "hsa-miR-9896", "rno-miR-3478", "mmu-miR9897-5p", "cre-miR9897-3p")
miRNA_type <- c("IMMATURE_HAIR_PIN","IMMATURE_HAIR_PIN","IMMATURE_HAIR_PIN","IMMATURE_HAIR_PIN","IMMATURE_HAIR_PIN","IMMATURE_HAIR_PIN",
               "MATURE", "MATURE", "MATURE", "MATURE", "MATURE", "MATURE", "MATURE", "MATURE", "MATURE", "MATURE")
MiRNADT<- data.frame(cbind(Sequence, miRNA_Name, miRNA_type))
MiRNAname(MiRNADT)

brengong/ConservationtextmineR documentation built on July 29, 2019, 10:05 a.m.