estimate.cell.proportions: Estimate cell-type coefficients. Returns matrix of cell-type...
In brentp/celltypes450: Deal with cell types in 450K data.
Description
Usage
Arguments
Value
Description
Estimate cell-type coefficients. Returns matrix of cell-type proportions.
Usage
1
estimate.cell.proportions(B, top_n = 500, mc.cores = 2, cell.coefs = NULL)
Arguments
B
matrix of beta values (n_probes * n_samples) rownames must
be the illumina cg id or the chrom:position
top_n
number of probes from cell.coefs to use
mc.cores
number of cores to use for parallelization
cell.coefs
path to tab-delimited file containind DMR-probes for the
cell types of interest. system.file("extdata", "houseman-dmrs.txt",
package="celltypes450")
Value
matrix of estimated cell-type proportions
brentp/celltypes450 documentation built on May 13, 2019, 5:11 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Estimate cell-type coefficients. Returns matrix of cell-type proportions.
Usage
1 | estimate.cell.proportions(B, top_n = 500, mc.cores = 2, cell.coefs = NULL)
|
Arguments
B |
matrix of beta values (n_probes * n_samples) rownames must be the illumina cg id or the chrom:position |
top_n |
number of probes from cell.coefs to use |
mc.cores |
number of cores to use for parallelization |
cell.coefs |
path to tab-delimited file containind DMR-probes for the cell types of interest. system.file("extdata", "houseman-dmrs.txt", package="celltypes450") |
Value
matrix of estimated cell-type proportions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.