Files in brentscott93/biophysr

Analysis tools for muscle biophysics

R/add_relative_velocity.R R/analyze_cardiac_motility.R R/analyze_mini_ensemble.R R/analyze_motility.R R/app.R R/bin_plot.R R/c1v1.R R/conc_calc.R R/count_events.R R/detrend_trap.R R/drc.duty_ratio.R R/drc.michaelis_menten.R R/drc.xDP_release_xTP_binding.R R/drive_downread.R R/drive_hidden_markov_analysis_shiny.R R/drive_make_trap_observations_shiny.R R/drive_upload_trap_shiny.R R/drive_writeup.R R/dygraph_clean_shave.R R/dygraph_trim_and_shave.R R/ensemble_average.R R/equipartition.R R/event_frequency.R R/extract_coef.R R/find_peaks.R R/fit_exp.R R/fit_hill.R R/fit_hill_nest.R R/fit_hill_nest_pm.R R/fit_hill_pm.R R/fit_hmm.R R/format_dropbox_path.R R/get_coefficients.R R/group_files.R R/gui.R R/hidden_markov_analysis.R R/hidden_markov_analysis_shiny.R R/histo_plotly.R R/identify_mini_events.R R/import_processed_trap.R R/import_shiny.R R/import_tsv.R R/import_xls.R R/list_dir.R R/list_files.R R/make_trap_observations.R R/make_trap_observations_shiny.R R/measure_events.R R/measure_mini.R R/measure_mini_durations.R R/measure_mini_ensemble.R R/mini_ensemble_analyzer.R R/mini_ensemble_analyzer_gui.R R/mini_ensemble_analyzer_shiny.R R/mini_find_true_end.R R/mini_rescale_start.R R/plot_analyze_mini_ensemble.R R/plot_distr.R R/plot_motility.R R/plot_motility2.R R/possibly_hill_nest.R R/possibly_hill_nest_pm.R R/predict_hill.R R/predict_mm.R R/round_any.R R/running_mv.R R/sheets_group.R R/shiny_clean_dygraph.R R/shiny_hidden_markov_analysis.R R/shiny_make_trap_observations.R R/shiny_mini_ensemble_analyzer.R R/shiny_move_trap.R R/shiny_summarize_trap.R R/shiny_summarize_trapR.R R/shiny_trap_plot_summary.R R/shiny_trap_upload.R R/shiny_trim_dygraph.R R/simulate_trap.R R/simulate_trap_custom.R R/simulation_drive_hidden_markov_analysis_shiny.R R/simulation_drive_make_trap_observations_shiny.R R/squysh_time.R R/step_cal.R R/summarize_mini_events.R R/summarize_motility.R R/summarize_trap_shiny.R R/theme_ppt.R R/write_temp_csv.R R/write_temp_tsv.R README.md inst/shiny/global.R inst/shiny/server.R inst/shiny/ui.R inst/shiny_old/global.R inst/shiny_old/server.R inst/shiny_old/ui.R man/add_relative_velocity.Rd man/analyze_cardiac_motility.Rd man/analyze_mini_ensemble.Rd man/analyze_motility.Rd man/app.Rd man/bin_plot.Rd man/c1v1.Rd man/conc_calc.Rd man/count_events.Rd man/detrend_trap.Rd man/drc.duty_ratio.Rd man/drc.michaelis_menten.Rd man/drc.xDP_release_xTP_binding.Rd man/drive_downread.Rd man/drive_hidden_markov_analysis_shiny.Rd man/drive_make_trap_observations_shiny.Rd man/drive_writeup.Rd man/dygraph_clean_shave.Rd man/dygraph_trim_and_shave.Rd man/ensemble_average.Rd man/equipartition.Rd man/event_frequency.Rd man/extract_coef.Rd man/find_peaks.Rd man/fit_exp.Rd man/fit_hill.Rd man/fit_hill_nest.Rd man/fit_hill_nest_pm.Rd man/fit_hill_pm.Rd man/fit_hmm.Rd man/format_dropbox_path.Rd man/get_coefficients.Rd man/group_files.Rd man/gui.Rd man/hidden_markov_analysis.Rd man/hidden_markov_analysis_shiny.Rd man/histo_plotly.Rd man/identify_mini_events.Rd man/import_processed_trap.Rd man/import_shiny.Rd man/import_tsv.Rd man/import_xls.Rd man/list_dir.Rd man/list_files.Rd man/make_trap_observations.Rd man/make_trap_observations_shiny.Rd man/measure_events.Rd man/measure_mini.Rd man/measure_mini_rescaled.Rd man/mini_ensemble_analyzer.Rd man/mini_ensemble_analyzer_gui.Rd man/mini_ensemble_analyzer_shiny.Rd man/mini_find_true_end.Rd man/mini_rescale_start.Rd man/plot_analyze_mini_ensemble.Rd man/plot_distr.Rd man/plot_motility.Rd man/plot_motility2.Rd man/possibly_hill_nest.Rd man/possibly_hill_nest_pm.Rd man/predict_hill.Rd man/predict_mm.Rd man/round_any.Rd man/running_mv.Rd man/sheets_group.Rd man/shiny_clean_dygraph.Rd man/shiny_hidden_markov_analysis.Rd man/shiny_make_trap_observations.Rd man/shiny_mini_ensemble_analyzer.Rd man/shiny_move_trap.Rd man/shiny_summarize_trap.Rd man/shiny_trap_upload.Rd man/shiny_trim_dygraph.Rd man/simulate_trap.Rd man/simulate_trap_custom.Rd man/simulation_drive_hidden_markov_analysis_shiny.Rd man/squysh_time.Rd man/step_cal.Rd man/summarize_mini_events.Rd man/summarize_motility.Rd man/summarize_trap_shiny.Rd man/theme_ppt.Rd man/upload_trap_shiny.Rd man/write_temp_csv.Rd man/write_temp_tsv.Rd