buildAffyCytoScan:

Usage Arguments Examples

Usage

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buildAffyCytoScan(filePath, sampleName = NA, labName = NA, useSNP = FALSE)

Arguments

filePath
sampleName
labName
useSNP

Examples

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##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (filePath, sampleName = NA, labName = NA, useSNP = FALSE) 
{
    fileName <- gsub("(.*)/", "", filePath)
    object <- new("cghObj", info = c(fileName = fileName, sampleName = sampleName, 
        labName = labName, platform = "Affymetrix_CytoScanHD"))
    affyData <- .readCytoScan(filePath, useSNP)
    object@info <- c(object@info, affyData$infos)
    object@cnSet <- affyData$values
    object <- .preset(object)
    return(object)
  }

brian-bot/rCGH documentation built on May 13, 2019, 5:11 a.m.