1 | buildAffyCytoScan(filePath, sampleName = NA, labName = NA, useSNP = FALSE)
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filePath |
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sampleName |
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labName |
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useSNP |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | ##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
## The function is currently defined as
function (filePath, sampleName = NA, labName = NA, useSNP = FALSE)
{
fileName <- gsub("(.*)/", "", filePath)
object <- new("cghObj", info = c(fileName = fileName, sampleName = sampleName,
labName = labName, platform = "Affymetrix_CytoScanHD"))
affyData <- .readCytoScan(filePath, useSNP)
object@info <- c(object@info, affyData$infos)
object@cnSet <- affyData$values
object <- .preset(object)
return(object)
}
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