softermax: Create softermax Objects

Description Usage Arguments Value See Also

View source: R/softermax.R

Description

softermax creates a softermax object

softermax.experiment creates a softermax.experiment object, which stores information about an experiment

softermax.plate creates a softermax.plate object, which stores information about a plate

softermax.note creates a softermax.note object, which stores information about a note

softermax.wavelength creates a softermax.wavelength object, which stores information about a read at a particular wavelength

softermax.well creates a softermax.well object, which stores information about a well in a microtiter plate

softermax.template creates a softermax.template object, which stores layout information for a microtiter plate

Usage

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softermax(experiments = list(), attrs = list())

softermax.experiment(name, plates = list(), notes = list(),
  attrs = list())

softermax.plate(name, wavelengths = list(), temperatures = NULL,
  attrs = list())

softermax.note(name, text_data = list(), attrs = list())

softermax.wavelength(wavelength, wells = list(), attrs = list())

softermax.well(name, times, values, attrs = list())

softermax.template(x, wellsAsFactors = TRUE, groupsAsFactors = TRUE,
  typesAsFactors = TRUE)

Arguments

experiments

A list of softermax.experiment objects

attrs

A list of attributes relevant to the object

name

Name describing the experiment/plate/name/etc.

plates

A list of softermax.plate objects

notes

A list of softermax.note objects

wavelengths

A list of softermax.wavelength objects

temperatures

Temperature(s) at which plate was read (default: NULL)

text_data

A list of strings

wavelength

An integer specifying a read wavelength

wells

A list of softermax.well objects

times

A vector of read times (numeric)

values

A vector of read values (numeric)

x

A data frame

wellsAsFactors

A logical value indicating whether well names (e.g., "A6") should be treated as factors or not (default: TRUE)

groupsAsFactors

A logical value indicating whether well groups should be treated as factors or not (default: TRUE)

typesAsFactors

A logical value indicating whether well group types should be treated as factors or not (default: TRUE)

Value

An object of the corresponding type

See Also

is.softermax


briandconnelly/softermax documentation built on Sept. 23, 2017, 8:09 p.m.