get_all_markers: Manipulation with markers
In brickmanlab/commonR: Helper scripts used in Brickman Lab
Description
Manipulation with markers
Usage
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get_all_markers(
seu,
filename = NULL,
positive = T,
min_n = 10,
alpha = 0.05,
logfold = 1
)
Arguments
seu
Seurat object
filename
When specified, save into a file
positive
Only return positive markers (Default: True)
min_n
Number of markers per identity (Default: 10)
alpha
Threshhold for adjusted p-value (Default: 0.05)
logfold
Minimum required logfold change (Default: 1)
brickmanlab/commonR documentation built on Dec. 19, 2021, 11:44 a.m.
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Description
Manipulation with markers
Usage
1 2 3 4 5 6 7 8 | get_all_markers(
seu,
filename = NULL,
positive = T,
min_n = 10,
alpha = 0.05,
logfold = 1
)
|
Arguments
seu |
Seurat object |
filename |
When specified, save into a file |
positive |
Only return positive markers (Default: True) |
min_n |
Number of markers per identity (Default: 10) |
alpha |
Threshhold for adjusted p-value (Default: 0.05) |
logfold |
Minimum required logfold change (Default: 1) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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