plot_significant: Visualize Violin plot with significance

In brickmanlab/commonR: Helper scripts used in Brickman Lab

Description

Visualize Violin plot with significance

Usage

plot_significant(
  seu,
  gene,
  conditions = NULL,
  test = "wilcox.test",
  asterisk = F,
  pos_only = F,
  plot_type = "violin",
  add_jitter = F
)

Arguments

seu	Seurat object
gene	Gene of interest
conditions	Specify which conditions to compare, otherwise use ones specified with 'Idents()' (Default: NULL)
test	Test (wilcox.test, t.test or custom func) (Default: wilcox.test)
asterisk	Replace p-values with asterisks (Default: False)
pos_only	Display only significant results (Default: False)
plot_type	Type of plot: violin, boxplot or jitter (Default: violin)
add_jitter	Display points (Default: False)

brickmanlab/commonR documentation built on Dec. 19, 2021, 11:44 a.m.