broadinstitute/ImagingAMARETTO
ImagingAMARETTO: tools for interpreting multi-omics networks for relevance to clinical outcomes and radiographic and histopathology imaging-derived biomarkers

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CreateHyperGeoTestAll: Title CreateHyperGeoTestAll

CreateHyperGeoTestAll: Title CreateHyperGeoTestAll
In broadinstitute/ImagingAMARETTO: ImagingAMARETTO: tools for interpreting multi-omics networks for relevance to clinical outcomes and radiographic and histopathology imaging-derived biomarkers

Description Usage Arguments Value Examples

View source: R/cAMARETTO_HTMLreport.R

Description

Title CreateHyperGeoTestAll

Usage

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CreateHyperGeoTestAll(cAMARETTOresults, cAMARETTOnetworkM,
  cAMARETTOnetworkC, hyper_geo_reference, driverGSEA = TRUE,
  NrCores = 4)

Arguments

cAMARETTOresults
cAMARETTOnetworkM
cAMARETTOnetworkC
hyper_geo_reference
driverGSEA
NrCores

Value

Geneset Enrichment Analysis for the entire communities.

Examples

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CreateHyperGeoTestAll(cAMARETTOresults, cAMARETTOnetworkM, cAMARETTOnetworkC, hyper_geo_reference = './h.all.v6.2.symbols.gmt', driverGSEA=TRUE,NrCores=4)

broadinstitute/ImagingAMARETTO documentation built on Dec. 3, 2019, 6:38 p.m.

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