HyperGeoEnrichmentTest: Title HyperGeoEnrichmentTest
In broadinstitute/ImagingAMARETTO: ImagingAMARETTO: tools for interpreting multi-omics networks for relevance to clinical outcomes and radiographic and histopathology imaging-derived biomarkers
Description
Usage
Arguments
Value
Examples
View source: R/amaretto_htmlreport.R
Description
Title HyperGeoEnrichmentTest
Usage
1
2
HyperGeoEnrichmentTest(AMARETTOresults, hyper_geo_reference,
driverGSEA = TRUE, NrCores = 4)
Arguments
AMARETTOresults
AMARETTO results output
hyper_geo_reference
GMT file with gene sets to compare with.
driverGSEA
if TRUE, module drivers will also be included in the hypergeometric test.
NrCores
Number of cores for parallel processing.
Value
Hyper-Geometric Enrichment Test table
Examples
1
HyperGeoEnrichmentTest(AMARETTOresults=NULL, hyper_geo_reference, driverGSEA=TRUE, MSIGDB=TRUE, NrCores=4)
broadinstitute/ImagingAMARETTO documentation built on Dec. 3, 2019, 6:38 p.m.
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Description Usage Arguments Value Examples
View source: R/amaretto_htmlreport.R
Description
Title HyperGeoEnrichmentTest
Usage
1 2 | HyperGeoEnrichmentTest(AMARETTOresults, hyper_geo_reference,
driverGSEA = TRUE, NrCores = 4)
|
Arguments
AMARETTOresults |
AMARETTO results output |
hyper_geo_reference |
GMT file with gene sets to compare with. |
driverGSEA |
if TRUE, module drivers will also be included in the hypergeometric test. |
NrCores |
Number of cores for parallel processing. |
Value
Hyper-Geometric Enrichment Test table
Examples
1 | HyperGeoEnrichmentTest(AMARETTOresults=NULL, hyper_geo_reference, driverGSEA=TRUE, MSIGDB=TRUE, NrCores=4)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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