R/data.R

In broadinstitute/ImagingAMARETTO: ImagingAMARETTO: tools for interpreting multi-omics networks for relevance to clinical outcomes and radiographic and histopathology imaging-derived biomarkers

#' BatchData
#'
#' A dataset for conducting batch corerction in TCGA samples
#'
#' @format A data frame with 23263 observations and 3 variables:
#' @source \url{AMARETTO}
"BatchData"

#' Driver_Genes
#'
#' A list of cancer driver genes described in literature.
#'
#' @format List
#' @source \url{AMARETTO}
"Driver_Genes"

#' ProcessedDataLIHC
#'
#' A list of dataframes of processed toy example dataset from TCGA-LIHC.
#'
#' @format List
#' @source \url{AMARETTO}
"ProcessedDataLIHC"

#' MsigdbMapping
#'
#' A dataset containing all MSIGDB pathways and their descriptions. .
#'
#' @format List
#' @source \url{AMARETTO}
"MsigdbMapping"

#' AMARETTOinit_all
#'
#' A dataframe containing of MSIGDB geneset names, their urls and descriptions.
#'
#' @format List
#' @source \url{CommunityAMARETTO}
"AMARETTOinit_all"

#' AMARETTOresults_all
#'
#' A dataframe containing of MSIGDB geneset names, their urls and descriptions.
#'
#' @format List
#' @source \url{CommunityAMARETTO}
"AMARETTOresults_all"

#' ProcessedDataTCGA
#'
#' A list of dataframes of processed toy example dataset from TCGA-LIHC.
#'
#' @format List
#' @source \url{CommunityAMARETTO}
"ProcessedDataTCGA"

#' ProcessedDataCCLE
#'
#' A list of dataframes of processed toy example dataset from CCLE-LIVER.
#'
#' @format List
#' @source \url{CommunityAMARETTO}
"ProcessedDataCCLE"