XiaPlotBars: XiaPlotBars

In bryandmartin/MicrobiomePack: Tools for Microbiome data analysis

Description

Function to plot Xia model fit, with empirical 95 percent bars

Usage

XiaPlotBars(W, X = NULL, out, main = "Composition Fitting Graph",
  niter = 1000, diagV = FALSE, smallV = FALSE, sub = FALSE)

Arguments

W	raw count matrix used in model fit
out	model fit from LNM.EM
main	desired title for plot, defaults to Composition Fitting graph
niter	number of simulations for bars, defaults to 1000
diagV	boolean of whether to use diagonal Sigma for simulations, defaults to FALSE
smallV	boolean of whether to use diagonal Sigma with very small entries for simulations, defaults to false
sub	desired subtitle for plot, defaults to MSPE

bryandmartin/MicrobiomePack documentation built on May 25, 2019, 3:25 p.m.