R/description.R

write.dcf(list(Package = "powsim",
               Type="Package",
               Title = "Power Simulations",
               Description = "This package provides simulation based methods for evaluating the statistical power to detect differential expression in bulk and single cell RNA-seq experiments",
               Version = "1.0",
               Imports = "methods,
                          stats,
                          moments,
                          S4Vectors,
                          AnnotationDbi,
                          Biobase,
                          BiocParallel,
                          doParallel,
                          parallel,
                          reshape2,
                          dplyr,
                          tidyr,
                          data.table,
                          ggplot2,
                          ggthemes,
                          ggExtra,
                          cowplot,
                          scales,
                          fitdistrplus,
                          NBGOF,
                          MASS,
                          pscl,
                          nonnest2,
                          cobs,
                          msir,
                          drc,
                          scran,
                          scater,
                          edgeR,
                          limma,
                          DESeq2,
                          baySeq,
                          NOISeq,
                          EBSeq,
                          DSS,
                          MAST,
                          scde,
                          scDD,
                          ROTS,
                          BPSC,
                          IHW,
                          qvalue",
               Remotes = "url::https://github.com/kdkorthauer/scDD/archive/develop.zip,
               gu-mi/NBGOF, hms-dbmi/scde, nghiavtr/BPSC",
               Depends = "R (>= 3.3),
                          gamlss.dist",
               Suggests = "BiocStyle,
                           knitr",
               VignetteBuilder = 'knitr',
               License = "GPL",
               NeedsCompilation = "no",
               Author = "Beate Vieth",
               Date = paste(Sys.Date()),
               Maintainer = "Beate Vieth <vieth@bio.lmu.de>"),
               file = "DESCRIPTION")

# old Imports
# monocle, VGAM, NBPSeq
bvieth/powsim documentation built on May 13, 2019, 9:04 a.m.