parallelnh_WIN: Parallel NewHybrids - Windows version
In bwringe/parallelnewhybrid: Parallelization of NewHybrids
Description
Usage
Arguments
Author(s)
References
Description
paralllelnh_WIN is the Windows version of the function that allows NewHybrids (Anderson and Thompson 2002) to be run in parallel. It does so by creating a vector of file names to be run, that are held within a single folder. paralleleNH_WIN then assigns a job to each of the cores available in the computer. As each task finishes, parallelnh_WIN assigns a new analysis to the idle core.
Usage
1
parallelnh_WIN(folder.data, where.NH, burnin, sweeps)
Arguments
folder.data
A file path to the folder in which the NewHybrids formatted files to be analyzed, and their associated individual file, reside. Note the path provided must end in "/"
where.NH
A file path to the NewHybrids installation folder. Note this folder must be named "newhybrids", and the path provided must end in "/"
burnin
An integer specifying how many burnin steps NewHybrids is to run
sweeps
An integer specifying how many sweep steps NewHybrids is to run
Author(s)
Brendan Wringe bwringe@gmail.com
References
Anderson EC, Thompson EA. A model-based method for identifying
species hybrids using multilocus genetic data.
Genetics. Genetics Society of America;
2002;160: 1217-1229.
bwringe/parallelnewhybrid documentation built on May 13, 2019, 9:24 a.m.
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Description Usage Arguments Author(s) References
Description
paralllelnh_WIN is the Windows version of the function that allows NewHybrids (Anderson and Thompson 2002) to be run in parallel. It does so by creating a vector of file names to be run, that are held within a single folder. paralleleNH_WIN then assigns a job to each of the cores available in the computer. As each task finishes, parallelnh_WIN assigns a new analysis to the idle core.
Usage
1 | parallelnh_WIN(folder.data, where.NH, burnin, sweeps)
|
Arguments
folder.data |
A file path to the folder in which the NewHybrids formatted files to be analyzed, and their associated individual file, reside. Note the path provided must end in "/" |
where.NH |
A file path to the NewHybrids installation folder. Note this folder must be named "newhybrids", and the path provided must end in "/" |
burnin |
An integer specifying how many burnin steps NewHybrids is to run |
sweeps |
An integer specifying how many sweep steps NewHybrids is to run |
Author(s)
Brendan Wringe bwringe@gmail.com
References
Anderson EC, Thompson EA. A model-based method for identifying species hybrids using multilocus genetic data. Genetics. Genetics Society of America; 2002;160: 1217-1229.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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