cbind.scanoneperm: Combine columns from multiple scanone permutation results
In byandell/qtl: Tools for analyzing QTL experiments

Description Usage Arguments Details Value Author(s) See Also Examples

Concatenate the columns from different runs of scanone with n.perm > 0.

1 2	## S3 method for class 'scanoneperm' cbind(..., labels)

`...`	A set of objects of class `scanoneperm`. These are the permutation results from `scanone` (that is, when `n.perm > 0`), generally run with different phenotypes or methods.
`labels`	A vector of character strings, of length 1 or of the same length as the input `...`, to be appended to the column names in the output.

The aim of this function is to concatenate the results from multiple runs of a permutation test scanone, generally for different phenotypes and/or methods, to be used in parallel with c.scanone.

The concatenated input, as a scanoneperm object. If different numbers of permutation replicates were used, those columns with fewer replicates are padded with missing values (NA).

Karl W Broman, kbroman@biostat.wisc.edu

summary.scanoneperm, scanone, c.scanoneperm, c.scanone

data(fake.f2)
fake.f2 <- calc.genoprob(fake.f2)

operm1 <- scanone(fake.f2, method="hk", n.perm=10, perm.Xsp=TRUE)
operm2 <- scanone(fake.f2, method="em", n.perm=5, perm.Xsp=TRUE)

operm <- cbind(operm1, operm2, labels=c("hk","em"))
summary(operm)