manhattan.plot: Manhattan Plot

In caitiecollins/treeWAS: Phylogenetic tree-based microbial GWAS

Manhattan Plot

Description

Generate a Manhattan plot showing the association score values or p-values (y-axis) for each locus (x-axis) tested by an association test.

Usage

manhattan.plot(
  p.vals,
  x = c(1:length(p.vals)),
  col = "funky",
  transp = 0.25,
  sig.thresh = NULL,
  thresh.col = "red",
  snps.assoc = NULL,
  snps.assoc.col = "red",
  jitter.amount = 1e-05,
  min.p = NULL,
  log10 = FALSE,
  ylab = NULL,
  main.title = "Manhattan plot"
)

Arguments

p.vals

A numeric vector containing p-values or association score values for each genetic locus.

Author(s)

Caitlin Collins [e-mail]

caitiecollins/treeWAS documentation built on March 9, 2024, 3:15 p.m.