API for caitiecollins/treeWAS
Phylogenetic tree-based microbial GWAS

Global functions
.get.locus	Source code
.get.p.vals	Source code
.getDescendants	Source code
.getFixed	Source code
.is.even	Source code
.is.integer0	Source code
.is.odd	Source code
.substrLeft	Source code
.substrRight	Source code
.switch.phen	Source code
asr	Man page Source code
assoc.test	Man page Source code
beeswarmPlot	Man page Source code
coalescent.sim	Man page Source code
coalescent.tree.sim	Man page Source code
dist_0	Man page
dist_0.01	Man page
dist_0.05	Man page
dist_0.1	Man page
dist_0.2	Man page
dist_0.25	Man page
fwd.coalescent.sim	Man page Source code
fwd.phen.sim	Man page Source code
fwd.snp.sim	Man page Source code
get.ancestral.pars	Man page Source code
get.assoc.scores	Man page Source code
get.binary.snps	Man page Source code
get.fitch.n.mts	Man page Source code
get.original.loci	Man page Source code
get.score3	Man page Source code
get.sig.snps	Man page Source code
get.tip.order	Man page Source code
get.unique.matrix	Man page Source code
ggplotbg	Man page Source code
heatmap.DNAbin	Man page Source code
keepFirstN	Man page Source code
keepLastN	Man page Source code
manhattan.plot	Man page Source code
memfree	Man page Source code
pair.tests	Man page
phen	Man page
phen.cont	Man page
phen.cont.rank	Man page
phen.plot.col	Man page
phen.reconstruction	Man page
phen.sim	Man page Source code
plot_phen	Man page Source code
plot_prob_phen	Man page Source code
plot_sig_snps	Man page Source code
print.treeWAS	Man page Source code
read.CFML	Man page Source code
removeFirstN	Man page Source code
removeLastN	Man page Source code
selectBiallelicSNP	Man page Source code
set.args	Man page Source code
simTest	Man page Source code
simultaneous.test	Man page Source code
simultaneous.test.epi	Man page Source code
snp.sim	Man page Source code
snp.sim.Q	Man page Source code Source code
snps	Man page
snps.assoc	Man page
snps.reconstruction	Man page
subsequent.test	Man page Source code
table.matrix	Man page Source code
terminal.test	Man page Source code
terminal.test.epi	Man page Source code
tree	Man page
tree.reconstruct	Man page Source code
treeWAS	Man page Source code
treeWAS.example.out	Man page
write.treeWAS	Man page Source code