API for caitiecollins/treeWAS
Phylogenetic tree-based microbial GWAS

Global functions
.get.locus Source code
.get.p.vals Source code
.getDescendants Source code
.getFixed Source code
.is.even Source code
.is.integer0 Source code
.is.odd Source code
.substrLeft Source code
.substrRight Source code
.switch.phen Source code
asr Man page Source code
assoc.test Man page Source code
beeswarmPlot Man page Source code
coalescent.sim Man page Source code
coalescent.tree.sim Man page Source code
dist_0 Man page
dist_0.01 Man page
dist_0.05 Man page
dist_0.1 Man page
dist_0.2 Man page
dist_0.25 Man page
fwd.coalescent.sim Man page Source code
fwd.phen.sim Man page Source code
fwd.snp.sim Man page Source code
get.ancestral.pars Man page Source code
get.assoc.scores Man page Source code
get.binary.snps Man page Source code
get.fitch.n.mts Man page Source code
get.original.loci Man page Source code
get.score3 Man page Source code
get.sig.snps Man page Source code
get.tip.order Man page Source code
get.unique.matrix Man page Source code
ggplotbg Man page Source code
heatmap.DNAbin Man page Source code
keepFirstN Man page Source code
keepLastN Man page Source code
manhattan.plot Man page Source code
memfree Man page Source code
pair.tests Man page
phen Man page
phen.cont Man page
phen.cont.rank Man page
phen.plot.col Man page
phen.reconstruction Man page
phen.sim Man page Source code
plot_phen Man page Source code
plot_prob_phen Man page Source code
plot_sig_snps Man page Source code
print.treeWAS Man page Source code
read.CFML Man page Source code
removeFirstN Man page Source code
removeLastN Man page Source code
selectBiallelicSNP Man page Source code
set.args Man page Source code
simTest Man page Source code
simultaneous.test Man page Source code
simultaneous.test.epi Man page Source code
snp.sim Man page Source code
snp.sim.Q Man page Source code Source code
snps Man page
snps.assoc Man page
snps.reconstruction Man page
subsequent.test Man page Source code
table.matrix Man page Source code
terminal.test Man page Source code
terminal.test.epi Man page Source code
tree Man page
tree.reconstruct Man page Source code
treeWAS Man page Source code
treeWAS.example.out Man page
write.treeWAS Man page Source code
caitiecollins/treeWAS documentation built on Sept. 9, 2024, 8:23 a.m.