treeWAS.example.out: Example output of treeWAS.

In caitiecollins/treeWAS: Phylogenetic tree-based microbial GWAS

Example output of treeWAS.

Description

This "treeWAS" class object is a list containing the output of a treeWAS analysis. This GWAS analysis was performed to identify associations between loci in the example genetic data matrix (see: data(snps)) and phenotypic states in the example phenotypic vector (see: data(phen)), along the phylogenetic tree (see: data(tree)).

Usage

data(treeWAS.example.out)

Format

A treeWAS class object, comprising a list of length 5.

Details

This treeWAS output was returned by the function: treeWAS(snps, phen, tree). treeWAS output contains elements describing the significant associations identified by each of the three association scores applied to all genetic loci. Additional elements of the output return all data that was used in the GWAS analysis, including both data input to treeWAS and all relevant data generated by treeWAS.

For a detailed description of the elements of this output, please scroll down to the "Value" section of the treeWAS function documentation, which can be accessed with: ?treeWAS. More information can also be found in the treeWAS vignette.

Author(s)

Caitlin Collins [e-mail]

caitiecollins/treeWAS documentation built on March 9, 2024, 3:15 p.m.