plot_sig_snps: Plot null distribution and significant sites.
In caitiecollins/treeWAS: Phylogenetic tree-based microbial GWAS

plot_sig_snps

R Documentation

Plot null distribution and significant sites.

Description

Plot a histogram of the null distribution, indicating the significance threshold and the names and association scores of significant sites.

Usage

plot_sig_snps(
  corr.dat,
  corr.sim,
  corr.sim.subset = NULL,
  sig.corrs = NULL,
  sig.snps = NULL,
  sig.thresh = NULL,
  test = NULL,
  sig.snps.col = "blue",
  hist.col = rgb(0, 0, 1, 0.5),
  hist.subset.col = rgb(1, 0, 0, 0.5),
  thresh.col = "seasun",
  snps.assoc = NULL,
  snps.assoc.col = "red",
  bg = "lightgray",
  grid = TRUE,
  freq = FALSE,
  plot.null.dist = TRUE,
  plot.dist = FALSE,
  main.title = TRUE,
  ...
)