Files in califano-lab/NaRnEA
Nonparametric analytical Rank-based Enrichment Analysis - An Information Theoretic Framework for Protein Activity Measurement
.DS_Store
.Rapp.history
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NaRnEA.Rproj
R/EnrichmentPlot.R
R/NaRnEA.R
R/cptac-coad-data.R
R/cptac-hnsc-data.R
R/cptac-luad-data.R
R/gene-name-map-data.R
R/luad-ges-data.R
R/luad-network-data.R
R/matrix_NaRnEA.R
R/tcga-coad-data.R
R/tcga-hnsc-data.R
R/tcga-luad-data.R
README.md
data/.DS_Store
data/ARACNe3/Entrez_SigP.rds
data/ARACNe3/Entrez_TF.rds
data/ARACNe3/Entrez_coTF.rds
data/ARACNe3/aracne.jar
data/ARACNe3/ljv_apmi_estimator.cpp
data/CPTAC_COAD.rda
data/CPTAC_HNSC.rda
data/CPTAC_LUAD.rda
data/GSEA_4.2.1/.DS_Store
data/GSEA_4.2.1/gsea-cli.bat
data/GSEA_4.2.1/gsea-cli.sh
data/GSEA_4.2.1/gsea.args
data/GSEA_4.2.1/gsea.bat
data/GSEA_4.2.1/gsea.command
data/GSEA_4.2.1/gsea.sh
data/GSEA_4.2.1/gsea_hidpi.sh
data/GSEA_4.2.1/icon_64x64.png
data/GSEA_4.2.1/lib/jide-components-3.7.4.jar
data/GSEA_4.2.1/lib/jide-dock-3.7.4.jar
data/GSEA_4.2.1/lib/jide-grids-3.7.4.jar
data/GSEA_4.2.1/modules/SGLayout.jar
data/GSEA_4.2.1/modules/algorithms.jar
data/GSEA_4.2.1/modules/batik-awt-util-1.10.jar
data/GSEA_4.2.1/modules/batik-bridge-1.10.jar
data/GSEA_4.2.1/modules/batik-codec-1.10.jar
data/GSEA_4.2.1/modules/batik-dom-1.10.jar
data/GSEA_4.2.1/modules/batik-gui-util-1.10.jar
data/GSEA_4.2.1/modules/batik-gvt-1.10.jar
data/GSEA_4.2.1/modules/batik-parser-1.10.jar
data/GSEA_4.2.1/modules/batik-svg-dom-1.10.jar
data/GSEA_4.2.1/modules/batik-svggen-1.10.jar
data/GSEA_4.2.1/modules/batik-transcoder-1.10.jar
data/GSEA_4.2.1/modules/batik-util-1.10.jar
data/GSEA_4.2.1/modules/batik-w3c-dom-1.10.jar
data/GSEA_4.2.1/modules/batik-xml-1.10.jar
data/GSEA_4.2.1/modules/commons-cli-1.2.jar
data/GSEA_4.2.1/modules/commons-compress-1.9.jar
data/GSEA_4.2.1/modules/commons-io-2.4.jar
data/GSEA_4.2.1/modules/commons-lang3-3.4.jar
data/GSEA_4.2.1/modules/commons-logging-1.2.jar
data/GSEA_4.2.1/modules/dom4j-full.jar
data/GSEA_4.2.1/modules/ecs.jar
data/GSEA_4.2.1/modules/edtftpj.jar
data/GSEA_4.2.1/modules/forms-1.0.7.jar
data/GSEA_4.2.1/modules/gsea-minimal-4.2.1.jar
data/GSEA_4.2.1/modules/httpclient-4.5.2.jar
data/GSEA_4.2.1/modules/httpcore-4.4.4.jar
data/GSEA_4.2.1/modules/jcommon-1.0.23.jar
data/GSEA_4.2.1/modules/jfreechart-1.5.0.jar
data/GSEA_4.2.1/modules/jgoodies-uif-lite.jar
data/GSEA_4.2.1/modules/jide-common-3.7.4.jar
data/GSEA_4.2.1/modules/json-simple-1.1.1.jar
data/GSEA_4.2.1/modules/log4j-1.2-api-2.17.0.jar
data/GSEA_4.2.1/modules/log4j-api-2.17.0.jar
data/GSEA_4.2.1/modules/log4j-core-2.17.0.jar
data/GSEA_4.2.1/modules/looks-2.0.4.jar
data/GSEA_4.2.1/modules/maven-artifact-3.8.2.jar
data/GSEA_4.2.1/modules/trove-1.1b5.jar
data/GSEA_4.2.1/modules/ujmp-complete-0.3.0.jar
data/GSEA_4.2.1/readme.txt
data/LUAD_ges.rda
data/LUAD_network.rda
data/TCGA_COAD.rda
data/TCGA_HNSC.rda
data/TCGA_LUAD.rda
data/gene.name.map.rda
man/.DS_Store
man/CPTAC_COAD.Rd
man/CPTAC_HNSC.Rd
man/CPTAC_LUAD.Rd
man/EnrichmentPlot.Rd
man/LUAD_ges.Rd
man/LUAD_network.Rd
man/NaRnEA.Rd
man/TCGA_COAD.Rd
man/TCGA_HNSC.Rd
man/TCGA_LUAD.Rd
man/combine_nes.Rd
man/directed_nes.Rd
man/figures/.DS_Store
man/figures/Fig_1_1.png
man/figures/Fig_1_2.png
man/figures/Fig_1_3.png
man/figures/Fig_1_4.png
man/figures/Fig_2_1.png
man/figures/Fig_2_2.png
man/figures/Fig_2_3.png
man/figures/Fig_2_4.png
man/figures/Fig_3_1.png
man/figures/Fig_3_2.png
man/figures/Fig_3_3.png
man/figures/Fig_3_4.png
man/gene.name.map.Rd
man/matrixNaRnEA.Rd
man/nes_covariance.Rd
man/undirected_nes.Rd
vignettes/.DS_Store
vignettes/.gitignore
vignettes/MANIFEST.txt
vignettes/NaRnEA_COAD.Rmd
vignettes/NaRnEA_HNSC.Rmd
vignettes/NaRnEA_LUAD.Rmd
