Man pages for califano-lab/NaRnEA
Nonparametric analytical Rank-based Enrichment Analysis - An Information Theoretic Framework for Protein Activity Measurement
| combine_nes | Generates a final NES from the combination of the Directed... |
| CPTAC_COAD | Protein Abundance data from COAD |
| CPTAC_HNSC | Protein Abundance data from HNSC |
| CPTAC_LUAD | Protein Abundance data from LUAD |
| directed_nes | Computes the Directed NES |
| EnrichmentPlot | Nonparametric analytical Rank-based Enrichment Analysis... |
| gene.name.map | Gene name convention map |
| LUAD_ges | LUAD GES Vector |
| LUAD_network | LUAD Network List |
| matrixNaRnEA | Runs the NaRnEA algorithm on multiple samples / regulons... |
| NaRnEA | Nonparametric analytical rank-based enrichment analysis... |
| nes_covariance | Compute the Covariance of the Directed and Undirected NES. |
| TCGA_COAD | Bulk RNA-Seq data from COAD |
| TCGA_HNSC | Bulk RNA-Seq data from HNSC |
| TCGA_LUAD | Bulk RNA-Seq data from LUAD |
| undirected_nes | Computes the Undirected NES |
