plotIDs: Plot the assigned ID numbers

In cammiller/imagingPC: Analysis of Imaging Mass Spectrometry Data using a Process Convolution Approach

Description

plotIDs plots the samples and overlays the sample IDs.

Usage

plotIDs(data, xCoord = "x", yCoord = "y", IDVar = "assignID",
  textSize = 4, TMA = FALSE)

Arguments

data	The dataset containing x- and y-coordinates and a sample identifier.
xCoord	A character string specifying the name of the x-coordinate variable.
yCoord	A character string specifying the name of the y-coordinate variable.
IDVar	A character string speciffying the sample ID variable.
textSize	The size of the sample IDs on the plot.
TMA	A TRUE/FALSE variable specifying whether or not the data came from a tissue microarray (TMA). This is only used to determine how to color the samples. If TMA=TRUE, then the samples are colored using a continuous color scale. If TMA=FALSE, then the samples are colored using a discrete color scale.

Value

A plot of the tissue samples colored according to the sample ID and overlaid with the ID.

Examples

data("TAMdata")
TAMdata <- assignIDs(TAMdata)
plotIDs(TAMdata)

cammiller/imagingPC documentation built on June 28, 2019, 12:04 a.m.