summary.structureList: Summarize structureList object

In cammiller/imagingPC: Analysis of Imaging Mass Spectrometry Data using a Process Convolution Approach

Description

summary.structureList provides basic results for an object of class structureList.

Usage

## S3 method for class 'structureList'
summary(object)

Arguments

object

An object of class structureList. This is the result of a call to the chooseStructures function.

Value

For every level a spatial variable (provided in the estRange function), the summary.rangeList prints the chosen support structure, the total number of support points across all samples after removing support points, and the number of samples. If no spatial variable was provided, only one line of information is printed.

Examples

data("TAMdata")
# The dataset is trimmed only for the speed of the example
TAMdata <- TAMdata[TAMdata$subject < 3, ]
TAMdata <- rScale(TAMdata, subjectVar = 'subject', sampleVar = 'ROI',
                  xCoord = 'x', yCoord = 'y')
rangs <- estRange(TAMdata, outcome = 'X1282.auc', spatialVar = 'TAM',
                  semivEst = 'modulus', logTransform = TRUE)
structs <- chooseStructures(rangs)
summary(structs)

cammiller/imagingPC documentation built on June 28, 2019, 12:04 a.m.